PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0147s0210.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ARF | ||||||||
Protein Properties | Length: 832aa MW: 92846.5 Da PI: 6.4795 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.4 | 2.8e-23 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v SapurV1A.0147s0210.2.p 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSV 213 99*****************************86555544..8********************************************* PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 +F ++++ +l+++++r+ SapurV1A.0147s0210.2.p 214 LFI--WNEKNQLLLGIRRA 230 ***..8899999****997 PP | |||||||
2 | Auxin_resp | 119.6 | 2.5e-39 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k++ka+ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k SapurV1A.0147s0210.2.p 255 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 338 79********************************87599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.62E-49 | 113 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-41 | 122 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.52E-21 | 128 | 229 | No hit | No description |
Pfam | PF02362 | 2.0E-21 | 129 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-23 | 129 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.308 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.0E-34 | 255 | 338 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.4E-7 | 716 | 796 | No hit | No description |
Pfam | PF02309 | 2.7E-8 | 719 | 807 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.683 | 722 | 806 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 832 aa Download sequence Send to blast |
MKLSTSGLGG QQAGQEGEKK CLNSELWHAC AGPLVSLPTA GSRVVYFPQG HSEQVAATTN 60 KEIDAHIPNY PSLPPQLICQ LHNVTMHADV ETDEVYSQMT LQPLTPQEQK ETFLPMDLGM 120 PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF TQQPPAQELI ARDLHDVEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA TRPQTVMPSS 240 VLSSDSMHIG LLAAAAHAAA TNSCFTVFYN PRASPSEFVI PLSKYVKAVF HTRISVGMRF 300 RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP 360 LTTFPMYPSL FPLRLKRPWH PGSSSLLDSR DEASNGLMWL RSGSGEPGLP SLNFQANMLP 420 WMQQRLDPTM LGNDHNQRYQ AMLAAGMQNL GIGDPLRQQF MQLQQPFQYL QQSSSHNQLL 480 QLQQQQQQQQ AMPQSIPHNI LQAQNQISTD SLPRHLLQQQ LNNQPDDQSH QHQHIYHGGL 540 QIQTDQLHRQ QSNLPSPSFS KTEYVDSSSK FSATNAPMQN MLGSLCSEGS VNLLDFSRAG 600 QSTLTEQLPQ QSWVPKYAHQ EVNAFANSIS LPRTYPEKDP SMEAENCSSD AHNPTLFGVN 660 IDSSGLLLPT TVPRYSTSSI DADVSSMPLG DSGFQNSLYG CVQDSSELLS NAGQMDPPTP 720 SRTFVKVYKS GSVGRSLDIS RFSSYHELRE ELAQMFGIEG KLENPHRSGW QLVFVDREND 780 VLLLGDDPWE LFVNNVWYIK ILSPEDVLKM GEQGVEPSAP NAVQRMSGGV A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 15 | 359 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0147s0210.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147915 | 0.0 | EF147915.1 Populus trichocarpa clone WS0125_O23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454964.1 | 0.0 | auxin response factor 8 | ||||
Refseq | XP_024454965.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A1L6K4B0 | 0.0 | A0A1L6K4B0_POPTO; Auxin response factor | ||||
STRING | POPTR_0017s01870.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0147s0210.2.p |