PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0145s0250.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HB-other | ||||||||
Protein Properties | Length: 1150aa MW: 130217 Da PI: 7.2005 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.1 | 1.7e-09 | 5 | 53 | 8 | 56 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ql++L +++++++yps +++e+LA +Lt +qV+ WF +R +k SapurV1A.0145s0250.2.p 5 SQLQLQTLLKFYAEDKYPSPRAMEDLAVVSNLTFKQVRGWFIEKRRSDK 53 788**************************************99998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.305 | 1 | 55 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-8 | 1 | 59 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.20E-9 | 3 | 56 | No hit | No description |
SuperFamily | SSF46689 | 3.21E-10 | 3 | 57 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-9 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.6E-7 | 5 | 53 | IPR001356 | Homeobox domain |
SMART | SM00571 | 7.8E-10 | 385 | 444 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 12.589 | 385 | 444 | IPR018501 | DDT domain |
Pfam | PF02791 | 7.9E-10 | 386 | 441 | IPR018501 | DDT domain |
Pfam | PF15612 | 2.9E-6 | 665 | 704 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 1.1E-11 | 798 | 871 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1150 aa Download sequence Send to blast |
MKRKSQLQLQ TLLKFYAEDK YPSPRAMEDL AVVSNLTFKQ VRGWFIEKRR SDKIKNELIE 60 PPRLTKKLSV FKGRKGAAVA SDARKMLKQW ELSASNEDES NNPSSSKYKS APSEFQGRIG 120 KRKKLGLIQD LLTSDYILGK IFRKDGPPLG LEFDSLPTRA FHGCEDSRNS HPACQENQRA 180 NKRGKVSMCA AFDGQNCKES APVKKHGMGK GLMTVWRVTN PDGGDFPTGI HCGGSQITVT 240 PPISPPVSRK QPCQKKKRRQ PVSSLVKQRM LQKELQEKRK PSVRRREVES KRDEIQKQSF 300 REKCELALER LMNQECLNQF AMLVDDEELE LRELRAGTNP LTCTEHCAAN RLYGCSLCKD 360 LLAKFPPNSV KMKQPFAMQP WDSSLEAVKK LFKVFHFLYT YSVTVDICPF TLDELAQAFH 420 DKDSFLLGKI HVALLKLLLS DVETEISSGL LPHLSISCKF LALIHSVEDQ ENVVEFWKNS 480 LNPLTWTEIL CQVLIAAGFG SKQGGFRKEV LSKEMSLMVK RGLHPGTLKG ELYQLLSVQG 540 NNGSKVSDLA KSSQIMELNL AGTSDELELL ICSTLSSDIT LFEKISSSTF RLRINTLAKE 600 ASDFQSDTED SGIVHEDFHD NGAFSSSDSD CDSENSSPRN LKLIDYRKRK TRMLTFENEI 660 DESHPGEVWL LGLMEGEYSD LSIEEKLNGL VALIDLVSAG SSIRLEDLAR PTVESVPNIH 720 HGSGAKIKRS SSTKDNVPRP SWVHAGQIND TKEAYTSSKF FPVDSSVLFS KFDGKDKLSG 780 KEKEPEGMGP GINLHPMQSI FLGSDRRYNR YWLFLGPCNS YDPGHKRVYF ESSEDGHWEV 840 IDTEEALRAL LSVLDDRGKR EALLIESLEK REAFLCQEMS SRMVNDSGDQ CFKQSDQSEL 900 EIVREDSSSP VSDVDNNLTL TDIANDSLPP MGAIVLETGK KGKEENQKWN RLQQFDTWIW 960 NYFYCDLNAV KRSKRSYLES LRRCETCHDL YWRDEKHCKI CHTTFELDFD LEERYAIHSA 1020 TCRQKEDNVM FPKHKVLSSK LQSLKAAVYA IETVMPEDAL VGAWTKSAHR LWIRRLRRTS 1080 SLAELLQVVA DFVAAINEDW LFQCNLAQGS STYMEEIITC FPTMPQTSSA LALWLMKLDE 1140 LISPFLEKT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 254 | 258 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0145s0250.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216591 | 0.0 | AC216591.1 Populus trichocarpa clone POP002-D23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440437.1 | 0.0 | homeobox-DDT domain protein RLT3 | ||||
Swissprot | F4JRF5 | 0.0 | RLT3_ARATH; Homeobox-DDT domain protein RLT3 | ||||
TrEMBL | A0A2K1XYM7 | 0.0 | A0A2K1XYM7_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_000562m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 0.0 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0145s0250.2.p |