PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0145s0130.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 225aa MW: 25340.6 Da PI: 5.6506 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.2 | 2.5e-30 | 152 | 206 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LH++Fv+av++LGG++++tP+++l+lm+v+gLt+ +vkSHLQkYR SapurV1A.0145s0130.1.p 152 KPRLRWTEDLHSCFVNAVKELGGPQQTTPRSVLRLMNVEGLTIFQVKSHLQKYRQ 206 79****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.982 | 149 | 209 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-28 | 150 | 206 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.94E-16 | 152 | 206 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-24 | 152 | 206 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.8E-9 | 154 | 205 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSDKKGGHDD DREDTFFGGE RVGIPMESHH FFDGFHKEND GRSGFLDFGY GNPKNQYFEL 60 KLPHADHDDT QLGHLSPHGD CDENDETPTH HVPQNGTYHP AAVSSNEEVG GVVVEKEEEE 120 NNKEGPEQQP PSPPPPQQAH SHLRISYTSD LKPRLRWTED LHSCFVNAVK ELGGPQQTTP 180 RSVLRLMNVE GLTIFQVKSH LQKYRQGRYS VRGYSEPLRN GESF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-20 | 152 | 209 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-20 | 152 | 209 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-20 | 152 | 209 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-20 | 152 | 209 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0145s0130.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011008189.1 | 7e-97 | PREDICTED: uncharacterized protein LOC105113636 isoform X1 | ||||
TrEMBL | A0A3N7FZ88 | 8e-91 | A0A3N7FZ88_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s17030.1 | 6e-70 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18800 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G06020.1 | 7e-25 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0145s0130.1.p |