PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0141s0180.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 529aa    MW: 59128.4 Da    PI: 9.2715
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0141s0180.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-09424471448
                             S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                             WTt E  +l+d+++q+G+g+W+ I + m      Rt+ +++++w+++l
  SapurV1A.0141s0180.5.p 424 WTTPEVMKLIDGIAQYGTGRWTDIKKLMFsstAYRTPIDLRDKWRNLL 471
                             ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-13413474IPR009057Homeodomain-like
PROSITE profilePS5129412.882416475IPR017930Myb domain
SMARTSM007171.9E-8420473IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-16422496IPR009057Homeodomain-like
CDDcd116602.04E-16422472No hitNo description
PfamPF002493.1E-7424471IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MNEVKVDDSF APALEDEAVE VQHLLAEPKT DHVSVDGVLC LGKEKSSKCS ETNGFSFGFN  60
DGMRRNIGGL HSHITQGPDD LDLGVLDGFL DEVDEVDDIH AANDFSGAYE DFILDIELAQ  120
KVSYLDYTPR DGSRLRNSSS ESQSPGCSGS SNGAAGMSEL STATIPESES KNGWHNKTVK  180
CKLRRSSGDK WNSQEPGEDS VCPTSDDIEV LDELDDDAKP LISLVSGKNA KKVVQAAKAG  240
TSARQKRLRK PTKRYIEELS DPKSKQVMER KSDLSATLKD KRPKIRSHDE LHCGGALART  300
PKESFSENFN QAISKGIDEP LHLRSKPVSE RRTNPSFISK GRCWSVSSQN EPCQVRAVKF  360
APKELSLTGP SAQAPFESRP RRGRPKKSLP LSFLESEDDD SEDDCVKKRI FKKSNDRRKH  420
QRMWTTPEVM KLIDGIAQYG TGRWTDIKKL MFSSTAYRTP IDLRDKWRNL LRASGAQKRK  480
SNKKEDKEKL KDVVRSLPSS VFRRVRELAS LHPYPRFSPG GRYIRRKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0141s0180.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2312200.0CU231220.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381433.10.0uncharacterized protein LOC18100175
RefseqXP_006381434.10.0uncharacterized protein LOC18100175
RefseqXP_006381436.20.0uncharacterized protein LOC18100175
RefseqXP_024459622.10.0uncharacterized protein LOC18100175
TrEMBLU5GCT10.0U5GCT1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12820.20.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-22TRF-like 6