PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0140s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HB-PHD
Protein Properties Length: 726aa    MW: 82035.5 Da    PI: 10.065
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0140s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.81.2e-10505549953
                             HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                             ++ +e L ++F++n  ps++ +e L+k+lg++  +V+ WF+N R+
  SapurV1A.0140s0170.1.p 505 PDAVEKLRQVFAENELPSRTVKENLSKELGIEPGKVSKWFKNSRY 549
                             67899**************************************97 PP
2PHD34.93.5e-12235289150
                             SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                     PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                             +C+ C+     +++++vlCd +C+ +fH+kCl+++l++e++p g   w+C+ C++
  SapurV1A.0140s0170.1.p 235 FCAKCKLneVSQDNDIVLCDgTCNCAFHQKCLDPPLDTENIPPGdqGWFCKFCDC 289
                             699998866667********56********************9999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.09E-13227292IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.3E-11231289IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.238233290IPR019787Zinc finger, PHD-finger
CDDcd155045.60E-31235287No hitNo description
PfamPF006281.5E-9235289IPR019787Zinc finger, PHD-finger
SMARTSM002498.1E-8235288IPR001965Zinc finger, PHD-type
PROSITE patternPS013590236287IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.3E-11492548IPR009057Homeodomain-like
SuperFamilySSF466898.13E-10493553IPR009057Homeodomain-like
PROSITE profilePS5007111.904494554IPR001356Homeobox domain
SMARTSM003897.5E-9496558IPR001356Homeobox domain
CDDcd000864.05E-8497558No hitNo description
PfamPF000463.9E-8505549IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MGDSGKKSKQ QDSHKSSPSD TVNGSLLIKS LKIKKGGKLS HRKSEKPKPH LKTIINSSVS  60
KKKVNPKKGI RNSSTSRRLI HRKILHKALD KKASRKGASS ELQGKQLSTI DSEGNGKNAD  120
EGAIKKVKKR KPKKRKKDKV KIDEPPRLQR RARYLMIKMK LEQNLIDAYS GEGWKGKSRE  180
KIRPEKELLR ARKQILKCKL GLREIIRQVD SLSTVGCIED TVMAPDGSVS HEHIFCAKCK  240
LNEVSQDNDI VLCDGTCNCA FHQKCLDPPL DTENIPPGDQ GWFCKFCDCR MEIIEAMNAH  300
LGTHFSEDSG WQDIFKEEAA VPEGGNMLLN PEEEWPSDDS EDDDYDPERR ENIMSGAGTD  360
DDASDDTSNS TRLSWSSDGE VFSGSRRWEL DGLDFRNNSI YSSLDSDETS DGEIICGRRQ  420
RRTVDYKKLY NEMFGKDAPA HEQPSEDEDW GPSKRKRREK ESDAASTLMT LYESKKRCKN  480
NETIEGMMKL PRDPQIRRPI FRLPPDAVEK LRQVFAENEL PSRTVKENLS KELGIEPGKV  540
SKWFKNSRYI ALKSRKVEKG EQVHNSRSIV SAEPTLKVMR DKTADLSLLK DSQAETGVCT  600
PKNLKSILQR KKPRSISKSL NQNEHKRGSF ESPTKSTEMN AEHNDDLSLK KLLKAKPKGV  660
KKKGNPISAA AESDMEKLCR AKTRVENLKQ KLMKLQTGKA RKSSKIRPLD ESVVYVPIAE  720
LREKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130KKVKKRK
2125136KVKKRKPKKRKK
3129137RKPKKRKKD
4132136KKRKK
5454459RKRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0140s0170.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325264.10.0pathogenesis-related homeodomain protein isoform X1
SwissprotP487851e-162PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLB9IN730.0B9IN73_POPTR; Uncharacterized protein
STRINGPOPTR_0018s13920.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-156pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]