PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0137s0280.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 222aa MW: 25455.9 Da PI: 8.4827 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 97.4 | 1.6e-30 | 58 | 146 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY++YA++vGF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra+tr gCka+++vkkek gkw+vt++++eHnH+ SapurV1A.0137s0280.1.p 58 FYDAYATHVGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAVTREGCKAMIVVKKEKAGKWVVTRFVKEHNHP 143 9*******************************************99.9*************************************** PP FAR1 89 lap 91 l+p SapurV1A.0137s0280.1.p 144 LVP 146 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.0E-29 | 58 | 146 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MSQSQMDENA SASMSEDGDM DQIVESSNGK ELAISDASSD IEPCVGMEFE SEEAAKVFYD 60 AYATHVGFIM RVDAFRRSMR DGKVVWRRLV CNKEGFRKLR PRRSENRKPR AVTREGCKAM 120 IVVKKEKAGK WVVTRFVKEH NHPLVPTPAN GRRTVLLSQT PDEKDIKIRE LTAELQRERK 180 RSAAYQEQLD MVLRDMEEHS NHLSRNIDDI VQSVKEIESR R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0137s0280.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441354.1 | 1e-162 | protein FAR1-RELATED SEQUENCE 2 | ||||
TrEMBL | A0A2K1XXK1 | 1e-161 | A0A2K1XXK1_POPTR; FAR1 family protein | ||||
STRING | EMJ01654 | 1e-134 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-95 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0137s0280.1.p |