PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0136s0510.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 393aa    MW: 45176.3 Da    PI: 6.6859
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0136s0510.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005683105323
                             ET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                             C+   Cgk+F +   L++H   H
  SapurV1A.0136s0510.1.p  83 CSfeGCGKTFIDAGALRKHSHIH 105
                             77779**************7766 PP
2zf-C2H216.42.6e-05110134123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                             y+C+   Cgk F ++s LkrH   H
  SapurV1A.0136s0510.1.p 110 YVCHyeGCGKKFLDSSKLKRHFLIH 134
                             9********************8877 PP
3zf-C2H215.26.1e-05186210123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                             + Cp   Cgk++ + + Lk+Hi +H
  SapurV1A.0136s0510.1.p 186 HICPysECGKRYAHEYKLKNHIASH 210
                             68*********************96 PP
4zf-C2H212.90.00032249274123
                             EEET..TTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                             y Cp   C k + + + Lk H+r+ H
  SapurV1A.0136s0510.1.p 249 YICPyeGCEKDYIHEYKLKLHLRReH 274
                             89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.4E-1476107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78381110IPR007087Zinc finger, C2H2
SMARTSM003550.003781105IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.78E-682106No hitNo description
PROSITE patternPS00028083105IPR007087Zinc finger, C2H2
SuperFamilySSF576673.64E-10105147No hitNo description
Gene3DG3DSA:3.30.160.602.5E-14108130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0024110134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.921110139IPR007087Zinc finger, C2H2
PROSITE patternPS000280112134IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-13131177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035576140180IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.19E-9166213No hitNo description
Gene3DG3DSA:3.30.160.609.5E-11178212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.035186210IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764186215IPR007087Zinc finger, C2H2
PROSITE patternPS000280188211IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-9244271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.51E-5244272No hitNo description
SMARTSM003550.016249274IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280251274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEAHHHHQFT HSIFERRPII KSKAPAVKWF KEWVPQDVVA TGGKCSLFKW VAENQLNVLK  60
EKEKEPLAPE PEPEPTTEVL FLCSFEGCGK TFIDAGALRK HSHIHGERQY VCHYEGCGKK  120
FLDSSKLKRH FLIHTGERDF VCPHEGCGKM IESFKGHSCF KLSMNAFSLD FNLRSHMKTH  180
SQENYHICPY SECGKRYAHE YKLKNHIASH HEKNSTPDVV KYATPPERIL KNTRPPPVVY  240
GSASSDRPYI CPYEGCEKDY IHEYKLKLHL RREHPDHVAD ENAETANTNA DNEMDEASDQ  300
DAYGGKRVNG KSQKHGRPKP NLKTPPVKVR HRKGSSPSPV SLHVVKKPWP VKDDTFEEED  360
SEETEEEDHE NAEDGWRYGR NNDDDEETED ED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-30742102117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0136s0510.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485070.0EF148507.1 Populus trichocarpa x Populus deltoides clone WS0131_N16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006389565.10.0zinc finger transcription factor YY1 isoform X1
SwissprotQ2V3L31e-154YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA9PJC20.0A9PJC2_9ROSI; Uncharacterized protein
STRINGPOPTR_0022s00900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-139C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]