PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0136s0090.4.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 272aa MW: 31085.8 Da PI: 8.7441

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0136s0090.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00043	106	129	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k+F +L +H + H SapurV1A.0136s0090.4.p 106 WRCGYCKKTFYEEKYLDKHFDNrH 129 58*****************77666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	108	129	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MGLTRKHFTV VFLCLCFTVF LLLISVSSSS SPQGQMETAA SSLEHDNGVH CSRERSRAAW 60 KIIDEYLMPF VEKERYKISS RCRLHPENDL YRDQEQHKMH VDINEWRCGY CKKTFYEEKY 120 LDKHFDNRHY DLLNVSHSRC LADLCGALHC DLVLDSAPHK TRCNPAAIGR NKHLCESLAD 180 SCFPVSEGPS ALHLNEFFLR QFCDAHTCSG GRKPFSKGGK RETSTLHVVI SVLVLMLLAL 240 FYIFMYLYRG GIKRSSQGLK HISKSGQKKR S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0136s0090.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011045214.1	0.0	PREDICTED: uncharacterized protein LOC105140180 isoform X2
TrEMBL	B9GJ01	0.0	B9GJ01_POPTR; Uncharacterized protein
STRING	POPTR_0001s36240.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-104	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0136s0090.4.p