PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0136s0090.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 293aa MW: 33626.9 Da PI: 9.0705

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0136s0090.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00047	107	130	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k+F +L +H + H SapurV1A.0136s0090.1.p 107 WRCGYCKKTFYEEKYLDKHFDNrH 130 58*****************77666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	109	130	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MGLTRKHFTV VFLCLCFTVF LLLISVSSSS SPQGQMETAA SRSLEHDNGV HCSRERSRAA 60 WKIIDEYLMP FVEKERYKIS SRCRLHPEND LYRDQEQHKM HVDINEWRCG YCKKTFYEEK 120 YLDKHFDNRH YDLLNVSHSR CLADLCGALH CDLVLDSAPH KTRCNPAAIG RNKHLCESLA 180 DSCFPVSEGP SALHLNEFFL RQFCDAHTCS GGRKPFSKGG KRETSTLHVV ISVLVLMLLA 240 LFYIFMYLYR GGIKRSSQGL KHISKSGQKK RLKVIFMHSL NFSVEKTKIV QQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0136s0090.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011045209.1	0.0	PREDICTED: uncharacterized protein LOC105140180 isoform X1
Refseq	XP_011045210.1	0.0	PREDICTED: uncharacterized protein LOC105140180 isoform X1
Refseq	XP_011045211.1	0.0	PREDICTED: uncharacterized protein LOC105140180 isoform X1
Refseq	XP_011045212.1	0.0	PREDICTED: uncharacterized protein LOC105140180 isoform X1
Refseq	XP_011045213.1	0.0	PREDICTED: uncharacterized protein LOC105140180 isoform X1
TrEMBL	A0A2K2C7R7	0.0	A0A2K2C7R7_POPTR; Uncharacterized protein
STRING	POPTR_0001s36240.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3216	13	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-104	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0136s0090.1.p