PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0134s0380.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 168aa    MW: 18981.3 Da    PI: 9.739
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0134s0380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.42.2e-14957149
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            kri+n+  r+vt+skRr+g++KKA+ LS   ++++a++  s +g+l+++
  SapurV1A.0134s0380.1.p  9 KRIQNEDYRKVTYSKRRAGLIKKAKFLSSRFNTQIAIVSCSLSGRLFTF 57
                            79**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-17160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.815161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-19277IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-13323IPR002100Transcription factor, MADS-box
PfamPF003198.0E-131057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-132338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-133859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MTRRKIEIKR IQNEDYRKVT YSKRRAGLIK KAKFLSSRFN TQIAIVSCSL SGRLFTFGHP  60
SVDSVVDQFL DNYTIDSRGS SSDESSHDNT HGPSSSSKGV EDGKEGRRSN SWRALPIEDM  120
DMDMDMDGLR RYKASLEILR SNVASRLKEM EERASLARDF IGLLDAH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0134s0380.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451981.12e-91agamous-like MADS-box protein AGL61
TrEMBLA0A2K2BEB96e-86A0A2K2BEB9_POPTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2316234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-17AGAMOUS-like 62