PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0133s0090.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 311aa MW: 34217.7 Da PI: 6.4223

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0133s0090.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.2e-09	187	234	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+el+P + +k a +L + +++++sLq SapurV1A.0133s0090.2.p 187 SHSLAERARREKINQRMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 234 8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.11E-15	181	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.66E-8	181	238	No hit	No description
PROSITE profile	PS50888	14.672	183	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-14	183	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.5E-7	187	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-8	189	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDLTTGSGPE LDETGLDSLQ LGEDIRHLIA APSENASSFT ALLELPANQA VELLHSDSGR 60 KQYPNLTFPS NTALLERAAI FSVFHSSNSA DSSSVPSNSS SKNLEKGSAV KCEQLETESY 120 LDSCQPLVSD PTVDNSAPNA RPSSKRKERE KKVKAASKKS KSESSQQEEE KLPYVHVRAR 180 RGQATDSHSL AERARREKIN QRMKLLQELV PGCNKISGTA LVLDEIINHV QSLQRHVEFL 240 SMRLAAINPG MDFNVDSLLA AEVSIGLCLS IFPWVLCHST SKVYTMICNL NEIPMLHLNY 300 FLDKTIPWQL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0133s0090.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002322692.3	1e-137	transcription factor bHLH48
Swissprot	Q3EAI1	1e-72	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A2K1XAZ2	1e-135	A0A2K1XAZ2_POPTR; Uncharacterized protein
STRING	POPTR_0006s05600.1	1e-135	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	4e-69	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0133s0090.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]