PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0132s0010.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 502aa    MW: 55940.6 Da    PI: 5.7944
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0132s0010.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.31.5e-27312366156
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                             k +++WtpeLH++Fv+ave+L G ++A+P++ile+mkv+gLt+++v+SHLQkYR++
  SapurV1A.0132s0010.5.p 312 KMKVDWTPELHKKFVQAVEKL-GVDQAIPSRILEAMKVEGLTRHNVASHLQKYRMH 366
                             5689*****************.********************************96 PP
2Response_reg25.75.6e-10201261109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             vl+ d++ + +  +++ le  +y +v ++ +  eal  + ++   +++ ++ ++ ++++  + +k +++++ +lp i+ ++ +  ++
  SapurV1A.0132s0010.5.p  20 VLLLDEDSSSAADIKSKLEAMDY-IVYTFYNENEALSAISNEPgsFHVAIVEVSTSNSN--RSFKFLETSK-DLPTIMTSSIDCLNT 102
                             799999999999***********.***************99998899999998777755..6777777766.9*******9999*** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + +++ +Ga +fl Kp ++++l++
  SapurV1A.0132s0010.5.p 103 MMKCIALGAVEFLRKPLSEDKLRN 126
                             *********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.5E-1516170No hitNo description
SuperFamilySSF521721.42E-1416134IPR011006CheY-like superfamily
PROSITE profilePS5011022.04819132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-620127IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.60E-821131No hitNo description
PROSITE profilePS5129415.193309368IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-26310369IPR009057Homeodomain-like
SuperFamilySSF466893.23E-18311369IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-25312366IPR006447Myb domain, plants
PfamPF002491.3E-8315364IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MVCTTNDLSA WKDFPKGLRV LLLDEDSSSA ADIKSKLEAM DYIVYTFYNE NEALSAISNE  60
PGSFHVAIVE VSTSNSNRSF KFLETSKDLP TIMTSSIDCL NTMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFNAAG GDQSKSLKPV KDSVVSMLEL EVVPEENENE NMEKTENVSE  180
AQESNEQQSP ASDKYPAPST PQLKQGGRLL DDGDCQDHIN CSIEKESVEQ EEESKSVDTT  240
CAMSEETLQA GDPQSCTETV IKEEDDSTDG VKSENNMCPN PQNKDSLNHS NGRAEKASSL  300
HNSSGTRSNR KKMKVDWTPE LHKKFVQAVE KLGVDQAIPS RILEAMKVEG LTRHNVASHL  360
QKYRMHRRHI LPKEDDRRWP QLRDQVQRSY YPHKPIMAYP PYHSNHALPP GPVYPVWGAA  420
GSHAAGGHMW GPPGYSPWPQ TESCHWRPYQ GMHAEAWGCP VMPPHSPYSS IPQYASGFQS  480
ASMVNNSCGV PQKLLDLQPV Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-16317366655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0132s0010.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0289200.0CT028920.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368445.20.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440369.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440375.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440380.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440382.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-136APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A2K2BXM60.0A0A2K2BXM6_POPTR; ARR-B family protein
STRINGPOPTR_0001s02910.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.51e-133ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]