PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0132s0010.11.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 410aa    MW: 45730.1 Da    PI: 6.3241
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0132s0010.11.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.1e-27220274156
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                              k +++WtpeLH++Fv+ave+L G ++A+P++ile+mkv+gLt+++v+SHLQkYR++
  SapurV1A.0132s0010.11.p 220 KMKVDWTPELHKKFVQAVEKL-GVDQAIPSRILEAMKVEGLTRHNVASHLQKYRMH 274
                              5689*****************.********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011012.44140IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.4E-5947No hitNo description
PROSITE profilePS5129415.193217276IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-26218277IPR009057Homeodomain-like
SuperFamilySSF466892.39E-18219277IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-25220274IPR006447Myb domain, plants
PfamPF002499.9E-9223272IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MTSSIDCLNT MMKCIALGAV EFLRKPLSED KLRNIWQHVV HKAFNAAGGD QSKSLKPVKD  60
SVVSMLELEV VPEENENENM EKTENVSEAQ ESNEQQSPAS DKYPAPSTPQ LKQGGRLLDD  120
GDCQDHINCS IEKESVEQEE ESKSVDTTCA MSEETLQAGD PQSCTETVIK EEDDSTDGVK  180
SENNMCPNPQ NKDSLNHSNG RAEKASSLHN SSGTRSNRKK MKVDWTPELH KKFVQAVEKL  240
GVDQAIPSRI LEAMKVEGLT RHNVASHLQK YRMHRRHILP KEDDRRWPQL RDQVQRSYYP  300
HKPIMAYPPY HSNHALPPGP VYPVWGAAGS HAAGGHMWGP PGYSPWPQTE SCHWRPYQGM  360
HAEAWGCPVM PPHSPYSSIP QYASGFQSAS MVNNSCGVPQ KLLDLQPVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-16225274655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0132s0010.11.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0289200.0CT028920.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368445.20.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440369.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440375.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440380.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440382.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440384.10.0two-component response regulator-like APRR2 isoform X2
SwissprotQ6LA432e-93APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A2K2BXM60.0A0A2K2BXM6_POPTR; ARR-B family protein
TrEMBLA0A3N7EIT50.0A0A3N7EIT5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02910.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.55e-90ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]