PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0131s0170.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LSD
Protein Properties Length: 125aa    MW: 13305.6 Da    PI: 8.4384
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0131s0170.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD135.61.6e-11731125
                 zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                            C gCr lL YP GA++V+CalC tV
  SapurV1A.0131s0170.4.p  7 CRGCRSLLLYPSGASNVCCALCSTV 31
                            9**********************99 PP

2zf-LSD139.77.7e-134670125
                 zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                            C gCrtlL+Y rGA+ VRC++C+ V
  SapurV1A.0131s0170.4.p 46 CRGCRTLLMYARGATTVRCSCCHIV 70
                            9**********************98 PP

3zf-LSD145.11.6e-1484108125
                 zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                             Cg+C+t+L+YP GApsV+Ca+C+ V
  SapurV1A.0131s0170.4.p  84 CGNCQTTLMYPNGAPSVKCAVCHYV 108
                             **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.5E-12434IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-9731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.0E-144371IPR005735Zinc finger, LSD1-type
PfamPF069434.3E-114670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.8E-1281111IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-1384108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MQSQVVCRGC RSLLLYPSGA SNVCCALCST VTSIPPPGMD FAQLICRGCR TLLMYARGAT  60
TVRCSCCHIV NYAPGPNQVA HVNCGNCQTT LMYPNGAPSV KCAVCHYVTN VNVSTITVLR  120
HYLN*
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0131s0170.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826849e-32AC182684.2 Populus trichocarpa clone Pop1-37C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040571.12e-75PREDICTED: protein LSD1-like
RefseqXP_011040572.12e-75PREDICTED: protein LSD1-like
RefseqXP_011040573.12e-75PREDICTED: protein LSD1-like
RefseqXP_024467407.16e-75uncharacterized protein LOC7455048
SwissprotQ0J7V93e-50LSD1_ORYSJ; Protein LSD1
TrEMBLA0A2K1YKU71e-72A0A2K1YKU7_POPTR; Uncharacterized protein
STRINGPOPTR_0011s15810.11e-71(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.16e-53lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]