PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0129s0210.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 359aa    MW: 41342.2 Da    PI: 6.5629
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0129s0210.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.25.5e-5671361129
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 
                             +ppGfrFhPtdeelv++yL+kkv+++++++ +vik+vd+yk+ePwdL++  ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wk
  SapurV1A.0129s0210.3.p   7 VPPGFRFHPTDEELVDYYLRKKVNARRIDV-DVIKDVDLYKIEPWDLQElcRIGTdEQTEWYFFSHKDKKYPTGTRTNRATAAGFWK 92 
                             69****************************.9***************954555552555**************************** PP

                     NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                             atg+dk+++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  SapurV1A.0129s0210.3.p  93 ATGRDKAIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                             **********.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-605156IPR003441NAC domain
PROSITE profilePS5100559.8737156IPR003441NAC domain
PfamPF023656.8E-298135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MNTFTHVPPG FRFHPTDEEL VDYYLRKKVN ARRIDVDVIK DVDLYKIEPW DLQELCRIGT  60
DEQTEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GAPQEEGWVV CRVFKKRLPT MRKVSEHESV CWYDDQVAFL  180
HDLDSPKQNS QPDLGFQFPY PCKKEIDLQY QIPHDHFLQL PLLQSPKLLQ SAPTITCNSI  240
NAGYGLDINQ ASTIQSSTLT QEDHIQHANG QSFPSIYGNN NINEQAFDQV TDWRVLDKFV  300
ASQLSQDDVV KENSHQNASS HIFNTSSVHL VRHLNKQDTS VPENASTSTS SCQIDLWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-50615714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0129s0210.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5999370.0AB599937.1 Populus trichocarpa PtVNS06 mRNA for transcription factor, complete cds.
GenBankHQ2158520.0HQ215852.1 Populus trichocarpa wood-associated NAC domain transcription factor 3B (WND3B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029951.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-140NAC7_ARATH; NAC domain-containing protein 7
TrEMBLF1T1110.0F1T111_POPTR; Transcription factor
STRINGPOPTR_0012s14660.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-118NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]