PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0129s0210.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 41342.2 Da PI: 6.5629 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.2 | 5.5e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 +ppGfrFhPtdeelv++yL+kkv+++++++ +vik+vd+yk+ePwdL++ ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wk SapurV1A.0129s0210.1.p 7 VPPGFRFHPTDEELVDYYLRKKVNARRIDV-DVIKDVDLYKIEPWDLQElcRIGTdEQTEWYFFSHKDKKYPTGTRTNRATAAGFWK 92 69****************************.9***************954555552555**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 atg+dk+++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle SapurV1A.0129s0210.1.p 93 ATGRDKAIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 **********.8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-60 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.873 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-29 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MNTFTHVPPG FRFHPTDEEL VDYYLRKKVN ARRIDVDVIK DVDLYKIEPW DLQELCRIGT 60 DEQTEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GAPQEEGWVV CRVFKKRLPT MRKVSEHESV CWYDDQVAFL 180 HDLDSPKQNS QPDLGFQFPY PCKKEIDLQY QIPHDHFLQL PLLQSPKLLQ SAPTITCNSI 240 NAGYGLDINQ ASTIQSSTLT QEDHIQHANG QSFPSIYGNN NINEQAFDQV TDWRVLDKFV 300 ASQLSQDDVV KENSHQNASS HIFNTSSVHL VRHLNKQDTS VPENASTSTS SCQIDLWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-50 | 6 | 157 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0129s0210.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB599937 | 0.0 | AB599937.1 Populus trichocarpa PtVNS06 mRNA for transcription factor, complete cds. | |||
GenBank | HQ215852 | 0.0 | HQ215852.1 Populus trichocarpa wood-associated NAC domain transcription factor 3B (WND3B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029951.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-140 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | F1T111 | 0.0 | F1T111_POPTR; Transcription factor | ||||
STRING | POPTR_0012s14660.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1269 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-118 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0129s0210.1.p |
Publications ? help Back to Top | |||
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