PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0129s0130.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 140aa MW: 16213.6 Da PI: 9.9491 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.8 | 2.8e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRr g++KK +ELSvLCdae+ +iifss+gklye++s SapurV1A.0129s0130.1.p 10 RIENRTARQVTFSKRRGGLFKKTHELSVLCDAEIGLIIFSSNGKLYEFCS 59 8***********************************************96 PP | |||||||
2 | K-box | 48.7 | 3.2e-17 | 77 | 140 | 7 | 69 |
K-box 7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 + le++++e+ q+e+++++ke++ Lq + R + Ge+L+sL ++ L +Le+qLe s++k+R++K SapurV1A.0129s0130.1.p 77 MRvLESNDWEQIQKESKRIRKETDDLQLSVRCYRGENLSSLHYEGLAELEKQLECSVNKVRARK 140 45588999*******************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.132 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.0E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.87E-37 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-30 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-13 | 81 | 140 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.324 | 85 | 140 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MGRGKIAITR IENRTARQVT FSKRRGGLFK KTHELSVLCD AEIGLIIFSS NGKLYEFCSE 60 SSSIPQIIRR YEISKGMRVL ESNDWEQIQK ESKRIRKETD DLQLSVRCYR GENLSSLHYE 120 GLAELEKQLE CSVNKVRARK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-19 | 1 | 71 | 1 | 69 | MEF2C |
5f28_B | 3e-19 | 1 | 71 | 1 | 69 | MEF2C |
5f28_C | 3e-19 | 1 | 71 | 1 | 69 | MEF2C |
5f28_D | 3e-19 | 1 | 71 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0129s0130.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318890.2 | 3e-95 | MADS-box protein FBP24 isoform X1 | ||||
Swissprot | Q9ATE5 | 1e-52 | FBP24_PETHY; MADS-box protein FBP24 | ||||
TrEMBL | B9I4N6 | 7e-94 | B9I4N6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s14770.1 | 2e-94 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4935 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.3 | 9e-50 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0129s0130.1.p |
Publications ? help Back to Top | |||
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