PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0125s0090.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | E2F/DP | ||||||||
Protein Properties | Length: 475aa MW: 52795.6 Da PI: 4.6388 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 86 | 2.8e-27 | 151 | 216 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg SapurV1A.0125s0090.2.p 151 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 216 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.9E-29 | 148 | 218 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.45E-17 | 151 | 214 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.3E-34 | 151 | 216 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.0E-24 | 153 | 216 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 2.20E-47 | 228 | 334 | No hit | No description |
SuperFamily | SSF144074 | 1.94E-33 | 230 | 334 | No hit | No description |
Pfam | PF16421 | 1.7E-33 | 233 | 332 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0051446 | Biological Process | positive regulation of meiotic cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MSNSQAQNNQ SMKQPQQSSM QSHATNQRQH QQPLLFSSMK PPFLPPGDYH RFGDDQRRAV 60 SDHEVEGIVV KPPTLKRKSD AADHQGESSD WNAGHGYMEV VTSPLQTPVS GKGGKTPKTS 120 RLTKSSKSGS QSAAAALGSP GNNLTPTGPC RYDSSLGLLT KKFINLIKHA EDGILDLNKA 180 AETLEVQKRR IYDITNVLEG IGLIEKKLKN RIQWKGLDVS RPGEADDNNV ATLQAEVENL 240 TMEERRLDEQ TREMQERLRD LSEDENNQKW LFVTEEDIKS LPGFQNETLI AIKAPHGTTL 300 EVPDPDEAVD YPQRRYRIVL RSTMGPIDVY LVSQFEEKIE DIQGVEPPSC YPSTSGFDEN 360 PATSMVMEES RGEEVEMQEQ DGHRMCSDLN TAHDFVSGIM KIVPSDVDSD ADYWLLSDAG 420 VSITDMWRNE PVVEWNDLDT LHNDYAMPNV CTPHPQTPPS NPTEVPPGTN KSSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 8e-25 | 146 | 217 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0125s0090.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:18424613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY179506 | 0.0 | AY179506.1 Populus alba E2F mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006384787.1 | 0.0 | transcription factor E2FB isoform X1 | ||||
Swissprot | Q9FV71 | 1e-171 | E2FB_ARATH; Transcription factor E2FB | ||||
TrEMBL | U5GK73 | 0.0 | U5GK73_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s21100.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.2 | 1e-159 | E2F transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0125s0090.2.p |
Publications ? help Back to Top | |||
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