PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0123s0380.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

CO-like

Protein Properties

Length: 447aa MW: 49607.6 Da PI: 5.4982

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0123s0380.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.7	9.7e-08	20	58	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +++k + l+C+ ++ lC C +++H+ H SapurV1A.0123s0380.1.p 20 PCEFCNSKAAVLYCRADSAKLCLLCDQQIHSAnalslkH 58 5*****************************655666666 PP
2	CCT	61.1	3.7e-21	400	442	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R +a++RY+eK+k+R+++K+irYesRKa+A++R+RvKGrF k+ SapurV1A.0123s0380.1.p 400 RGNAMMRYREKKKNRRYDKRIRYESRKARADTRKRVKGRFIKA 442 7789************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	9.4E-11	16	63	IPR000315	B-box-type zinc finger
CDD	cd00021	2.45E-7	20	51	No hit	No description
PROSITE profile	PS50119	9.542	21	63	IPR000315	B-box-type zinc finger
Pfam	PF00643	9.2E-6	21	60	IPR000315	B-box-type zinc finger
Pfam	PF06203	1.8E-15	400	442	IPR010402	CCT domain
PROSITE profile	PS51017	15.269	400	442	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MIMEKGLNSK QKKDSFLFLP CEFCNSKAAV LYCRADSAKL CLLCDQQIHS ANALSLKHVR 60 SQICDNCRAG PASIHSSNDN LFLCQDCDWG SQNSSLSVPS LHNRNPVEGF MGCPPVVELA 120 SLFGFDFKSF LCVDSDPGSC LFEQEAVIFQ DSVVSSDDFS ALLSSGKSRQ EVYKQLVGMG 180 KREMVRVNGD GAELGPDTPP SRCAVKWNFQ GLELENGDEE LLHQQTSFTS LLISPNHAEA 240 SENGCVSDPG FMWDCNYTYQ GAQVSDFQLG TSMDCAVPAP QEEGYDVKDP GFMVKNYVDF 300 TEDGAFTSQK VLDDGHVASC CSTTCEDNLS RNSCSNHQLS RYKPPPENCS NTPPAGLSPE 360 SMPGEPNAHI QVMEQPSLTW FDTLDEVRQK GDAGLFAQNR GNAMMRYREK KKNRRYDKRI 420 RYESRKARAD TRKRVKGRFI KAIENR*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MIMEKGLNSK QKKDSFLFLP CEFCNSKAAV LYCRADSAKL CLLCDQQIHS ANALSLKHVR  60
SQICDNCRAG PASIHSSNDN LFLCQDCDWG SQNSSLSVPS LHNRNPVEGF MGCPPVVELA  120
SLFGFDFKSF LCVDSDPGSC LFEQEAVIFQ DSVVSSDDFS ALLSSGKSRQ EVYKQLVGMG  180
KREMVRVNGD GAELGPDTPP SRCAVKWNFQ GLELENGDEE LLHQQTSFTS LLISPNHAEA  240
SENGCVSDPG FMWDCNYTYQ GAQVSDFQLG TSMDCAVPAP QEEGYDVKDP GFMVKNYVDF  300
TEDGAFTSQK VLDDGHVASC CSTTCEDNLS RNSCSNHQLS RYKPPPENCS NTPPAGLSPE  360
SMPGEPNAHI QVMEQPSLTW FDTLDEVRQK GDAGLFAQNR GNAMMRYREK KKNRRYDKRI  420
RYESRKARAD TRKRVKGRFI KAIENR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0123s0380.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024462788.1	0.0	zinc finger protein CONSTANS-LIKE 13
TrEMBL	A0A3N7ED73	0.0	A0A3N7ED73_POPTR; Uncharacterized protein
STRING	POPTR_0001s33080.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4737	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	6e-68	B-box type zinc finger protein with CCT domain

Link Out ? help Back to Top
Phytozome	SapurV1A.0123s0380.1.p