PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0123s0310.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 199aa    MW: 21858.1 Da    PI: 8.2629
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0123s0310.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000174668123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C +C+++F ++  L  H++ H
  SapurV1A.0123s0310.1.p 46 FPCLYCPRRFYTSQALGGHQNAH 68
                            89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.55E-64373No hitNo description
PROSITE profilePS5015710.6164673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MADPSIFNFF NHQHQQYPSS SSSSPSSRPT KKSSTNLAQP SSSRHFPCLY CPRRFYTSQA  60
LGGHQNAHKR ERAALRRNNN TLNATISTDP SLIIPSPFLN HNLPPPASPP GVPFFNQYHR  120
FHQQALDHPM MITSYQFPTP PSTNGVYVSA PHYGGFYGVS AAATSLDHDI IGSGYDLSTS  180
TDNDDPNDPT NVDLTLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0123s0310.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298656.11e-115protein LATE FLOWERING
TrEMBLB9GFF81e-114B9GFF8_POPTR; Uncharacterized protein
STRINGPOPTR_0001s33210.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15014811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.15e-14C2H2 family protein