PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0123s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 331aa MW: 35062.9 Da PI: 9.4795 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.7 | 5e-39 | 79 | 163 | 2 | 86 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ + s++ s SapurV1A.0123s0030.1.p 79 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaA-AGGAISQQGAS 163 789******************************************************************88853.33333333222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-30 | 84 | 288 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 85 | 139 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 331 aa Download sequence Send to blast |
MDPKGSNSKN PHELPTFLTH AHPSPPPPPP LPLQTHTQQP QQLHSQNQQQ PNMGDNKPAE 60 IKDFQIVVAD KEEQKKQLAP KRSSNKDRHT KVEGRGRRIR MPALCAARIF QLTRELGHKS 120 DGETIQWLLQ QAEPSIIAAT GTGTIPASAL AAAGGAISQQ GASLSAGLHQ KIDDLGGSSS 180 SRASWAMLGG NLGRPHHVTT AGLWPSVGGY GFQSSSNTTG PSTTNIGTEA AAAAAGSSYL 240 QKLGFPGFDL PSNNMGPMSF TSILGGGTQQ LPGLELGLSQ DGHIGVLSPQ ALNHIYQQMG 300 HARVQQQQHQ HQHQQHQQNP SKDDSQGSGQ * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0123s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC215632 | 0.0 | AC215632.1 Populus trichocarpa clone POP074-O07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298640.1 | 0.0 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 6e-84 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | B9GF50 | 0.0 | B9GF50_POPTR; TCP family protein | ||||
STRING | POPTR_0001s33470.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27010.1 | 2e-74 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0123s0030.1.p |