PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0119s0210.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 336aa    MW: 37917.5 Da    PI: 5.7431
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0119s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.2e-31153211259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +D ++WrKYGqK++kgs++prsYYrC+s  gC ++k+vers++dp++++ tY+ eHnh 
  SapurV1A.0119s0210.1.p 153 SDMWAWRKYGQKPIKGSPYPRSYYRCSSLkGCLARKQVERSRTDPSIFILTYTAEHNHA 211
                             79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-32138213IPR003657WRKY domain
SuperFamilySSF1182903.66E-26146213IPR003657WRKY domain
PROSITE profilePS5081132.328147213IPR003657WRKY domain
SMARTSM007741.8E-35152212IPR003657WRKY domain
PfamPF031063.6E-25154210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MMSEFVCMED SWDLQALVRS GSGTKYEDFA KITNDPPSLF APLSFYQDEL FNFQETLETQ  60
TDFDGLYKPL YPVLHQNLKS PQSNILGTSI STTSISVPKE VKERQKVQKK RPVSPESATC  120
ENTDDATGAA KSKRRKNQHK KVVQHVKEDG LSSDMWAWRK YGQKPIKGSP YPRSYYRCSS  180
LKGCLARKQV ERSRTDPSIF ILTYTAEHNH AHPTRRSSLA GSTRIRPSMP KEATKNIEPN  240
VPAIKDELSS NFDGFLSPTT PSATSIEDEL VQNVSIKNEE LLDQGQILEE NESREIAMPD  300
LLFSDELFPS LEDLEWLLLD QFADCRSSNK STSFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-19143213877Probable WRKY transcription factor 4
2lex_A7e-19143213877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0119s0210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303610.10.0WRKY transcription factor 22
TrEMBLB9GWV80.0B9GWV8_POPTR; Uncharacterized protein
STRINGPOPTR_0003s13250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.18e-34WRKY family protein