PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0119s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TALE
Protein Properties Length: 665aa    MW: 74544.6 Da    PI: 6.816
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0119s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.4e-094294661954
                             HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                             Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  SapurV1A.0119s0060.1.p 429 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 466
                             554458******************************88 PP
2BELL114.26.9e-37291361272
                    BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                             + elqk+k+k+ls+leeVd+rY++y++q+++++ssFeavag g+a +Y +lA+ka+SrhFrcL+d i++qi
  SapurV1A.0119s0060.1.p 291 FIELQKRKTKMLSMLEEVDRRYRHYCDQMKAMVSSFEAVAGAGAASVYSALASKAMSRHFRCLRDGIVDQI 361
                             689*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-57229359IPR006563POX domain
PfamPF075262.2E-45235357IPR006563POX domain
PROSITE profilePS5007112.034407470IPR001356Homeobox domain
SMARTSM003891.1E-8410474IPR001356Homeobox domain
CDDcd000865.07E-11410471No hitNo description
SuperFamilySSF466891.03E-16411476IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-27413476IPR009057Homeodomain-like
PfamPF059208.9E-18427466IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MAREPCEDKS RNMVSSGSFC YPDVSSCNPT IQTHLVNQIQ GYESNPEIFN LTTGMEMIGF  60
SKNLQHHQSD SNSVMWKGFF NKAANNHHPG GPSSSKTIHE STNGDFYQHE YNKPDFSTGI  120
SEASNENLMI GSDHSAPWQE NRLLVDDSSL RCVFPCEGNE RPSQGLSLSL SSSNPSSIGL  180
HSFELRHNPT HQNQDNSQEE MRFFGKSPAN IQQQMVQDGF LTKAANLHHQ AQFQLRNSKY  240
LGPAQDLLKE FCNLGTKQVD ALQKKSHKPK QWDDDQTGSS SRKQSLQSLE FIELQKRKTK  300
MLSMLEEVDR RYRHYCDQMK AMVSSFEAVA GAGAASVYSA LASKAMSRHF RCLRDGIVDQ  360
IHATKKAMGE KDPVAPGTTK GETPRLKILD QALRQQRAFQ QMSMMESHPW RPQRGLPERS  420
VSFLRAWLFE HFLHPYPSDV DKHILARQTG LSRSQVSNWF INARVRLWKP MVEEMYLEET  480
KEQGNNMASS DGVTDLDENI NGRPNQNPSS TDQKPTPDQL NRIDSECLSS VISNPDKNDT  540
NKSTISFQSH HLQHQQHNFG NYGGMDLDFS SYNHHTAGGV SYANDNASNQ NFNGGGVSLT  600
LGLQQHKGSG VSLAFSPASQ SSLFYPRDHI EDGHPVQYSL LDGEGQNLPY RNLMGAQLLH  660
DMDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-15416474563Homeobox protein Meis2
3k2a_B6e-15416474563Homeobox protein Meis2
4xrm_A7e-15416474563Homeobox protein Meis2
4xrm_B7e-15416474563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0119s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0292921e-114CT029292.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385771.10.0homeobox protein BEL1 homolog
RefseqXP_006385773.10.0homeobox protein BEL1 homolog
RefseqXP_024452162.10.0homeobox protein BEL1 homolog
SwissprotQ388971e-149BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLU5GJA20.0U5GJA2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s13120.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46502030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-136TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]