PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0118s0340.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 180aa    MW: 20444.9 Da    PI: 9.1402
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0118s0340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.1e-182174457
                            -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                            + ++ ++q + Le+ F+ n++++ae++ +LA++lgL+ rqV +W+qNrRak k+
  SapurV1A.0118s0340.1.p 21 KKRLDRDQHRLLETSFNANQKLKAEDKIKLARQLGLPPRQVEIWYQNRRAKNKN 74
                            456899*********************************************995 PP
2HD-ZIP_I/II92.64.3e-3020111293
             HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                             +k+rl ++q +lLE+sF++++kL+ e K +lar+Lgl prqv++W+qnrRA+ k+  +E++y+ ++ ++ ++ +en+rLe++ + L+
  SapurV1A.0118s0340.1.p  20 RKKRLDRDQHRLLETSFNANQKLKAEDKIKLARQLGLPPRQVEIWYQNRRAKNKNNAMEHEYRNVQLELGNVLAENSRLENHISMLE 106
                             89************************************************************************************* PP

             HD-ZIP_I/II  89 eelke 93 
                             +el++
  SapurV1A.0118s0340.1.p 107 HELNN 111
                             99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.9041575IPR001356Homeobox domain
SMARTSM003894.1E-151879IPR001356Homeobox domain
SuperFamilySSF466895.43E-172082IPR009057Homeodomain-like
CDDcd000866.07E-142075No hitNo description
PfamPF000463.5E-152073IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-162381IPR009057Homeodomain-like
PRINTSPR000311.4E-54655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000311.4E-55571IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MNYHLQNQSQ SHENHALKPR KKRLDRDQHR LLETSFNANQ KLKAEDKIKL ARQLGLPPRQ  60
VEIWYQNRRA KNKNNAMEHE YRNVQLELGN VLAENSRLEN HISMLEHELN NVHQMILFGS  120
TTSASILASV SGSSNEQGNS TSQGNMICNW RDAGNDGIFR VDELYTCLKG SGNPLLPLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0118s0340.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309768.11e-97homeobox-leucine zipper protein ATHB-52
TrEMBLB9HGS43e-96B9HGS4_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01370.15e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1653559
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-21homeobox protein 52