PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0118s0310.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

HB-other

Protein Properties

Length: 1777aa MW: 199314 Da PI: 5.3416

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0118s0310.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.7e-17	26	82	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR +++qle+Le+ + + yps+ r+eL+ +lgL++rq ++WF+ rR k++k SapurV1A.0118s0310.1.p 26 KSKRKMKSASQLEILEKIYSVDTYPSEVVRAELSVQLGLSDRQLQMWFCHRRLKDRK 82 67999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-16	14	82	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.38E-15	20	82	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.244	23	83	IPR001356	Homeobox domain
SMART	SM00389	8.9E-15	25	87	IPR001356	Homeobox domain
CDD	cd00086	3.78E-13	26	82	No hit	No description
Pfam	PF00046	5.1E-15	26	82	IPR001356	Homeobox domain
PROSITE profile	PS50827	17.101	556	615	IPR018501	DDT domain
SMART	SM00571	1.0E-21	556	615	IPR018501	DDT domain
Pfam	PF02791	2.0E-17	557	612	IPR018501	DDT domain
Pfam	PF05066	1.6E-15	738	806	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	7.8E-9	952	993	IPR028942	WHIM1 domain
Pfam	PF15613	5.4E-14	1131	1203	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1777 aa Download sequence Send to blast
MEEAAADGGG VEVEAKNKTP GEGESKSKRK MKSASQLEIL EKIYSVDTYP SEVVRAELSV 60 QLGLSDRQLQ MWFCHRRLKD RKAPSVKRPC KESPSLAGMP SGGETGVVAE VGNEHGSGSS 120 PFVLGVDPRR AVGRPTGVAV PRISADVQTM NRYYEPQQSI AELRAIAFVE AQLGEPLRED 180 GPILGMEFDP LPPDAFGAPI GSATTGQQKQ PVRVFEANLY ERPDVKPIKS TTRTLHEYQF 240 LPQLPTVRAE AYERAAPSCQ YGSPADGHNV KTGSISATLP FMHANEQVSS EYGLSNQVPS 300 LSLMPQESRQ GHRFPSTTEY ETVLQKCSFT NIGMDVQSGA HLVTALDNPC MSSDRRVTHD 360 EDALRMERKR KSEEARIARE VEAHEKRIRK ELEKQDILRR RREEQMRKEM EKHDRERRKE 420 EERLLREKQR EVERYQREQR RELERREKYL QKESIRVEKM RQKEELRREK EAARQKAATE 480 RARARRMAKE SLELIDDERL ELMEVAASSK GLPSIIPLDF ETLQNLDLFR DKLTEFPPKS 540 VLLKRPFLIQ PWNDSEENVG NLLMVWRFLI TFADILGIWP FTLDEFVQAF HDYDPRLLSE 600 IHVSLLKSII KDIEDVARTP STGLGQNQNG AANPGGGHPQ IVEGAYAWGF DLRSWQRHLN 660 PLTWPEILRQ FGLSAGFGPQ LKKRNVDQAY LRDDNEGNDG EDVITNLRNG AAVENAVSIM 720 QERGFSNPRR SRHRLTPGTV KFAAFHVLSL EGSKGLTILE VADKIQKSGL RDLTTSKTPE 780 ASIAAALSRD SKLFERTAPS TYCVRQAYRK DPADADAILS AAKERIRTFK SGIVDGEDAD 840 DAERDEDSES DVAEDPEIDD LGTGLNSKKE AHDSPENEFN GKTILGNGTE SGGALKTPQV 900 RLENVRAGLN SQHSEDTNEL KGAGSSIDGS VDVAEICTIP DQDVGIDVSN PGEPWVQGLV 960 EGEYSDLSVE ERLNALVALI GVAIEGNSIR VALEERLEAA NALKKQMWAE AQLDKRRMKE 1020 EFVMRTQYSS STGNKMEPDL TVSATDPMVS VDERSIGMPV NAFVQQEQLS DRQIDMNYLN 1080 NMPFEGNMQM QDLSSGPDNL PYQQAGHIAE KSRSQLKSVI GHRAEEMYVY RSLPLGQDRR 1140 RNRYWQFTTS TSHNDPGCGR IFVELHDGRW RLIDSEEGFD TLLSSLDVRG VRESHLHAML 1200 QKIEVPFKET IRRRMLRANT EGQIKDLIKA EAVEMAAGPE SGTGMDSPRS TVCVPDSDMS 1260 ETSTSFTIEL GRNEIEKNHT LKRLQDFEKW MWKECFKSPV LCAMKYEKKR CTQLLGVCDY 1320 CHDTYFFEDS HCPSCHKTLE ASQTGLNFSE HVAYCERKLK MDPDSALCSL SFPPRIRLLK 1380 LLLALIEVSV LPEALQPVWT NGHRKSWGMK LQSSSCVDDL LQILTLLEVG MKRDYLSSNY 1440 ETSSELLSSS DPSGCTAHDA FNTETAPVLP WLPHTTAAVA LRIIEFDASI SYMLHHKLDS 1500 RKDRSAGNFI KLPSKHAVVK NTPDNETTQT PRQAGLLPED DWVDVGVGLA GLGREQGTGG 1560 RGRGRTRGGR SQTKIIGSRS ESSKKSASRS SVRLDKVLSW TVLPRGRGGR KRGRRSIRSR 1620 QKAVKKAAEI IPGRKIPKET MYEQSTRHLG RHARNVDETR FHMEEAKNSS SSERSEYNDE 1680 NENVPVSGDE YDDQVKDDYA GGFNGKSDDL LEGSDYNIDS NEEEDDDDAM NEDEDELGNL 1740 DVEEYINRDS DEDGIRDGGQ NGDQHGTESS SSDFSD*

Sequence ? help Back to Top

Protein Sequence Length: 1777 aa Download sequence Send to blast

MEEAAADGGG VEVEAKNKTP GEGESKSKRK MKSASQLEIL EKIYSVDTYP SEVVRAELSV  60
QLGLSDRQLQ MWFCHRRLKD RKAPSVKRPC KESPSLAGMP SGGETGVVAE VGNEHGSGSS  120
PFVLGVDPRR AVGRPTGVAV PRISADVQTM NRYYEPQQSI AELRAIAFVE AQLGEPLRED  180
GPILGMEFDP LPPDAFGAPI GSATTGQQKQ PVRVFEANLY ERPDVKPIKS TTRTLHEYQF  240
LPQLPTVRAE AYERAAPSCQ YGSPADGHNV KTGSISATLP FMHANEQVSS EYGLSNQVPS  300
LSLMPQESRQ GHRFPSTTEY ETVLQKCSFT NIGMDVQSGA HLVTALDNPC MSSDRRVTHD  360
EDALRMERKR KSEEARIARE VEAHEKRIRK ELEKQDILRR RREEQMRKEM EKHDRERRKE  420
EERLLREKQR EVERYQREQR RELERREKYL QKESIRVEKM RQKEELRREK EAARQKAATE  480
RARARRMAKE SLELIDDERL ELMEVAASSK GLPSIIPLDF ETLQNLDLFR DKLTEFPPKS  540
VLLKRPFLIQ PWNDSEENVG NLLMVWRFLI TFADILGIWP FTLDEFVQAF HDYDPRLLSE  600
IHVSLLKSII KDIEDVARTP STGLGQNQNG AANPGGGHPQ IVEGAYAWGF DLRSWQRHLN  660
PLTWPEILRQ FGLSAGFGPQ LKKRNVDQAY LRDDNEGNDG EDVITNLRNG AAVENAVSIM  720
QERGFSNPRR SRHRLTPGTV KFAAFHVLSL EGSKGLTILE VADKIQKSGL RDLTTSKTPE  780
ASIAAALSRD SKLFERTAPS TYCVRQAYRK DPADADAILS AAKERIRTFK SGIVDGEDAD  840
DAERDEDSES DVAEDPEIDD LGTGLNSKKE AHDSPENEFN GKTILGNGTE SGGALKTPQV  900
RLENVRAGLN SQHSEDTNEL KGAGSSIDGS VDVAEICTIP DQDVGIDVSN PGEPWVQGLV  960
EGEYSDLSVE ERLNALVALI GVAIEGNSIR VALEERLEAA NALKKQMWAE AQLDKRRMKE  1020
EFVMRTQYSS STGNKMEPDL TVSATDPMVS VDERSIGMPV NAFVQQEQLS DRQIDMNYLN  1080
NMPFEGNMQM QDLSSGPDNL PYQQAGHIAE KSRSQLKSVI GHRAEEMYVY RSLPLGQDRR  1140
RNRYWQFTTS TSHNDPGCGR IFVELHDGRW RLIDSEEGFD TLLSSLDVRG VRESHLHAML  1200
QKIEVPFKET IRRRMLRANT EGQIKDLIKA EAVEMAAGPE SGTGMDSPRS TVCVPDSDMS  1260
ETSTSFTIEL GRNEIEKNHT LKRLQDFEKW MWKECFKSPV LCAMKYEKKR CTQLLGVCDY  1320
CHDTYFFEDS HCPSCHKTLE ASQTGLNFSE HVAYCERKLK MDPDSALCSL SFPPRIRLLK  1380
LLLALIEVSV LPEALQPVWT NGHRKSWGMK LQSSSCVDDL LQILTLLEVG MKRDYLSSNY  1440
ETSSELLSSS DPSGCTAHDA FNTETAPVLP WLPHTTAAVA LRIIEFDASI SYMLHHKLDS  1500
RKDRSAGNFI KLPSKHAVVK NTPDNETTQT PRQAGLLPED DWVDVGVGLA GLGREQGTGG  1560
RGRGRTRGGR SQTKIIGSRS ESSKKSASRS SVRLDKVLSW TVLPRGRGGR KRGRRSIRSR  1620
QKAVKKAAEI IPGRKIPKET MYEQSTRHLG RHARNVDETR FHMEEAKNSS SSERSEYNDE  1680
NENVPVSGDE YDDQVKDDYA GGFNGKSDDL LEGSDYNIDS NEEEDDDDAM NEDEDELGNL  1740
DVEEYINRDS DEDGIRDGGQ NGDQHGTESS SSDFSD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0118s0310.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209002	0.0	AC209002.1 Populus trichocarpa clone POP040-E22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011047700.1	0.0	PREDICTED: uncharacterized protein LOC105141971 isoform X3
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2K1ZTZ3	0.0	A0A2K1ZTZ3_POPTR; Uncharacterized protein
STRING	POPTR_0007s01330.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	SapurV1A.0118s0310.1.p