PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0118s0110.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 172aa    MW: 18787.3 Da    PI: 8.4867
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0118s0110.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP72.29.1e-2375122148
                             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
                     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                             +Cqve+C+adl++ak+yhrrhkvC +h+ka+vvlv+g++qrfCqqCs 
  SapurV1A.0118s0110.2.p  75 CCQVEKCTADLTDAKQYHRRHKVCGQHAKAQVVLVAGIRQRFCQQCSS 122
                             6*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.4E-2368122IPR004333Transcription factor, SBP-box
PROSITE profilePS5114116.52973142IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-2174123IPR004333Transcription factor, SBP-box
PfamPF031101.3E-1776123IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDGKGKQIRM VMGRVVTKKD SADDSSDDEG YEQNQMEFME DDFFQSNKKK KVVVTAGGGG  60
GGRRVSGGGG GGMRCCQVEK CTADLTDAKQ YHRRHKVCGQ HAKAQVVLVA GIRQRFCQQC  120
SSLIEEDCDA DSMNYQNLMK PKEVVAGGWP DTTRGEGRML LNLTWKAQAA K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-1967123258squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16068GGRRVSGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0118s0110.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309744.23e-46squamosa promoter-binding protein 1
SwissprotQ387418e-21SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLB9HGP06e-45B9HGP0_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01030.11e-45(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.15e-20squamosa promoter binding protein-like 5
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]