PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0118s0110.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 203aa MW: 22726.6 Da PI: 9.7607 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.2 | 4.1e-42 | 75 | 151 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C+adl++ak+yhrrhkvC +h+ka+vvlv+g++qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk+ SapurV1A.0118s0110.1.p 75 CCQVEKCTADLTDAKQYHRRHKVCGQHAKAQVVLVAGIRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKNV 151 6**************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.7E-34 | 68 | 137 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.069 | 73 | 150 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.23E-38 | 74 | 154 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.7E-32 | 76 | 149 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MDGKGKQIRM VMGRVVTKKD SADDSSDDEG YEQNQMEFME DDFFQSNKKK KVVVTAGGGG 60 GGRRVSGGGG GGMRCCQVEK CTADLTDAKQ YHRRHKVCGQ HAKAQVVLVA GIRQRFCQQC 120 SRFHELSEFD ETKRSCRRRL AGHNERRRKN VVESHVEGSS RKVINETHGT QLKEMACGQA 180 DERGRIKITI QENATYKHFQ IS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-38 | 67 | 149 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 68 | GGRRVSGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0118s0110.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309744.2 | 1e-103 | squamosa promoter-binding protein 1 | ||||
Swissprot | Q9S7A9 | 3e-43 | SPL4_ARATH; Squamosa promoter-binding-like protein 4 | ||||
TrEMBL | B9HGP0 | 1e-102 | B9HGP0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01030.1 | 1e-102 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 3e-44 | squamosa promoter binding protein-like 4 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0118s0110.1.p |