PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0116s0210.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 244aa MW: 26215.9 Da PI: 8.1514 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.5 | 1.6e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA+ r+ +Pv+Ga+g++++ SapurV1A.0116s0210.1.p 2 SCNGCRVLRKGCSENCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPSLFQSLLFEACGRTVNPVNGAAGLLWT 88 6************************************************************************************** PP DUF260 83 lqqqleqlkaelall 97 ++++++q+++e++l+ SapurV1A.0116s0210.1.p 89 GNWHVCQAAVETVLR 103 *********999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.741 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSCNGCRVLR KGCSENCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PSLFQSLLFE ACGRTVNPVN GAAGLLWTGN WHVCQAAVET VLRGGALLPM PGSLTGGGGG 120 SPPPSSDETS EVEVACTDMW RLQDPNPNHH PRFSISRSRL SPKRTRTEEP VAVKLQQNDL 180 DLRLTPSFPL KGLGYKQEIR RPGTPSMNSA ESVTTNTACF DSAGLGDQYG VVGGETKLLK 240 LFL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0116s0210.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214283 | 0.0 | AC214283.1 Populus trichocarpa clone POP036-B20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011015565.1 | 1e-150 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 2e-93 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | U5G4U0 | 1e-148 | U5G4U0_POPTR; LBD family protein | ||||
STRING | POPTR_0007s10010.1 | 1e-149 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 5e-84 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0116s0210.1.p |