PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0114s0240.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 358aa    MW: 39959.7 Da    PI: 6.3239
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0114s0240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1079.8e-34206264159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers++dp++v++tYeg+H h+
  SapurV1A.0114s0240.1.p 206 LDDGYRWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDDPSIVVTTYEGQHIHP 264
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-35191266IPR003657WRKY domain
SuperFamilySSF1182901.27E-29198266IPR003657WRKY domain
PROSITE profilePS5081133.327201266IPR003657WRKY domain
SMARTSM007741.4E-40206265IPR003657WRKY domain
PfamPF031063.4E-27207264IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MMRISSVEKR EEKRELARIT LKTENFVMAN STFITPPPTP PSDFVHMPNV FSLSAPPPPP  60
TSSIFDMMPC DISAGGDQKA ESLGFMDLLE INQDFGASAS LFDWFNQNPI VVSPQQQQSF  120
VPSPASPVLE TSEVLNNPAT PNSSASISSS SNEVGEDALQ QVKAEDQEEE QDQDKNKKRL  180
KPKKRSQKRL REPRFAFMTK SEVDHLDDGY RWRKYGQKAV KNSPYPRSYY RCTSAGCGVK  240
KRVERSSDDP SIVVTTYEGQ HIHPSPVTPR GSIGFLADSS GFGASTSSFV IPQPHEYQQQ  300
HAYLYSPSPS LSFTSRFSPS FLHQEKRLES PPSLLRDHGL LQDIVPSQMI RKEAEEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-281992661077Probable WRKY transcription factor 4
2lex_A1e-281992661077Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0114s0240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312318.20.0probable WRKY transcription factor 48 isoform X1
TrEMBLB9HIL90.0B9HIL9_POPTR; Uncharacterized protein
STRINGPOPTR_0008s10280.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.11e-57WRKY DNA-binding protein 48