PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0112s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 73aa MW: 7879.62 Da PI: 10.6812 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 136.2 | 7.9e-43 | 7 | 72 | 5 | 70 |
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +e kGlnPGlivllv+gglll flvgny+ly+yaqk+lPP+kkkP+skkk+k+e+lkqGv++PGe SapurV1A.0112s0080.1.p 7 DAEPKGLNPGLIVLLVIGGLLLSFLVGNYVLYMYAQKTLPPKKKKPISKKKMKKERLKQGVSAPGE 72 6799*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 1.1E-40 | 8 | 72 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence Send to blast |
MGDVIKDAEP KGLNPGLIVL LVIGGLLLSF LVGNYVLYMY AQKTLPPKKK KPISKKKMKK 60 ERLKQGVSAP GE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0112s0080.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144583 | 1e-85 | EF144583.1 Populus trichocarpa clone WS01111_F03 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010852.1 | 3e-28 | PREDICTED: DNA-binding protein S1FA | ||||
Swissprot | Q42337 | 2e-16 | S1FA2_ARATH; DNA-binding protein S1FA2 | ||||
TrEMBL | W9SCA3 | 8e-26 | W9SCA3_9ROSA; DNA-binding protein S1FA1 | ||||
STRING | Lus10023177 | 1e-26 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5409 | 33 | 55 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0112s0080.1.p |