PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0111s0280.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NF-YA | ||||||||
Protein Properties | Length: 314aa MW: 34491.4 Da PI: 9.1928 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.8 | 1.3e-31 | 169 | 225 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQ+++I++RRq+Rak+e ekk k rkpylheSRh+hA+rR+Rg+gGrF SapurV1A.0111s0280.1.p 169 EEPVYVNAKQFNGIMRRRQARAKAELEKKA-VKVRKPYLHESRHQHAMRRARGCGGRF 225 69***************************9.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.6E-36 | 167 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.536 | 168 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.4E-28 | 170 | 225 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.9E-23 | 171 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 173 | 193 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.9E-23 | 202 | 225 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MMPAKSEKED RRLDHRGQSL FQSNVYSQPW WREVGNNPSL GETASKLSSV EYLNGSLLNA 60 VTQSKANTGL QKGAILNKEA HSDVTSLSDE STGQHHLKHL PSPTTVTMDG HREPNSQMEL 120 VGHSIVLTSH PYTDPQYGGM FASYTPQAMV PQFYGMTHAR MPLPLEMEEE PVYVNAKQFN 180 GIMRRRQARA KAELEKKAVK VRKPYLHESR HQHAMRRARG CGGRFLNTKK LDHSSGSTMS 240 DKGTGDLDSS GDLREGKGST VQEMQTHAFS NGHGGGTGLT SRYHSLSDNG SFLGQHMETT 300 HGNGVSNGDV PIH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-19 | 169 | 244 | 2 | 74 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0111s0280.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299939.2 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | B9GFD8 | 0.0 | B9GFD8_POPTR; NF-YA family protein | ||||
STRING | POPTR_0001s27300.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8962 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 2e-26 | nuclear factor Y, subunit A1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0111s0280.1.p |