PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0106s0450.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

SRS

Protein Properties

Length: 355aa MW: 36941.7 Da PI: 8.1899

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0106s0450.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	211.6	1.9e-65	140	299	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst 89 s t++C+dCGnqakkdC+h+RCRtCCksrgfdC+thvkstWv+aa+rrerq a+a a ++ +++ sk++r +++++++s+t SapurV1A.0106s0450.1.p 140 SATTTCEDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVAAARRRERQLI-ATAGGGAGSTGSTSGSKKPRLI-NSQTTTTSHT 224 57899*******************************************9655.4555666777788999999975.788899999 PP DUF702 90 klssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s+++++++ +tss +P +v ++avfrcvrv++v+dge+e+aYq++v+igGhvfkG+Lyd+G+e+ SapurV1A.0106s0450.1.p 225 STSNTTPPRSYDTSSshqdagfkerFPGQVTAPAVFRCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDHGIET 299 **********9999******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-60	142	298	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.1E-26	144	186	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.3E-29	249	297	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MGMLGLRDVF VVAPAASFNH HHHQHHEQIN LSTADPINAS NATALGVGVG VGVIPLLPSA 60 PCLTPLNMDD QDLLNNGRNK ISGIHQFWQN QGSQYIKKAS NTTPSILDHH NMSSTANLLL 120 QSGNGGGNGS GNLGGNSSSS ATTTCEDCGN QAKKDCSHRR CRTCCKSRGF DCSTHVKSTW 180 VAAARRRERQ LIATAGGGAG STGSTSGSKK PRLINSQTTT TSHTSTSNTT PPRSYDTSSS 240 HQDAGFKERF PGQVTAPAVF RCVRVTAVED GEDEYAYQAV VKIGGHVFKG FLYDHGIETR 300 DGFPNISELH LGGAGDGTGR HGASSSSPIL DPSAVYGASA GGLLAGSAFG NPIN*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MGMLGLRDVF VVAPAASFNH HHHQHHEQIN LSTADPINAS NATALGVGVG VGVIPLLPSA  60
PCLTPLNMDD QDLLNNGRNK ISGIHQFWQN QGSQYIKKAS NTTPSILDHH NMSSTANLLL  120
QSGNGGGNGS GNLGGNSSSS ATTTCEDCGN QAKKDCSHRR CRTCCKSRGF DCSTHVKSTW  180
VAAARRRERQ LIATAGGGAG STGSTSGSKK PRLINSQTTT TSHTSTSNTT PPRSYDTSSS  240
HQDAGFKERF PGQVTAPAVF RCVRVTAVED GEDEYAYQAV VKIGGHVFKG FLYDHGIETR  300
DGFPNISELH LGGAGDGTGR HGASSSSPIL DPSAVYGASA GGLLAGSAFG NPIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0106s0450.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011024965.1	1e-178	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X2
Swissprot	Q94CK9	2e-90	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2K2C4R4	1e-174	A0A2K2C4R4_POPTR; Uncharacterized protein
STRING	POPTR_0009s07510.1	1e-172	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-74	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	SapurV1A.0106s0450.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]