PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0106s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 364aa MW: 40341.9 Da PI: 9.7226 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.9 | 5.4e-29 | 62 | 115 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF +ave+LGG e AtPk +l+ m+ kgL+++hvkSHLQ+YR+ SapurV1A.0106s0010.1.p 62 PRLRWTPDLHLRFAQAVERLGGYEMATPKLVLQQMNTKGLSIAHVKSHLQMYRS 115 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-27 | 58 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.333 | 58 | 118 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.94E-13 | 60 | 116 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-21 | 62 | 117 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.9E-9 | 63 | 114 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MKLGGDQKND GLMMDASGKR KDEEGDGESK TKTSASSSNS IVDESEKASS SGVRPYVRSK 60 VPRLRWTPDL HLRFAQAVER LGGYEMATPK LVLQQMNTKG LSIAHVKSHL QMYRSKKIDD 120 QGQVINSRGG LIGSSDYFSL NFWQHSLLPN FDHNPSSNFR SRSVSRSTGH GNWIASPSVL 180 VPDSMTIRSG AGFYNSISER INVEIGSSTR HGPFHTCKNP TFNDHRRKLK QEFLDTESHR 240 SMFSGNSIQG QVSSPTKQPY FAAQISKRGG DTNESISSET KWSINAEKCS QTKRKADDLD 300 LSLTLFTESK EKEARRSLSW DEEDEGSNLS LSLSSTSTKE SNSIYLSMPS KHPKLTSTLD 360 LTM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-15 | 63 | 117 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-15 | 63 | 117 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-15 | 63 | 117 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-15 | 63 | 117 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0106s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299997.1 | 0.0 | probable transcription factor KAN2 isoform X2 | ||||
TrEMBL | B9GGQ9 | 0.0 | B9GGQ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s28690.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16555 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 6e-42 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0106s0010.1.p |