PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0104s0440.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 334aa    MW: 36867.1 Da    PI: 6.0341
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0104s0440.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00017269291123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++Cp+C+k+F +   L  H r+H
  SapurV1A.0104s0440.1.p 269 FECPYCSKVFGSGQALGGHKRSH 291
                             89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.2E-7328IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787431IPR007087Zinc finger, C2H2
SMARTSM003550.16426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.40.102.2E-4212280IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS501579.058226256IPR007087Zinc finger, C2H2
SuperFamilySSF576675.5E-7226291No hitNo description
SMARTSM0035553226246IPR015880Zinc finger, C2H2-like
PfamPF139120.013226246IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.284269291IPR007087Zinc finger, C2H2
SMARTSM003550.024269291IPR015880Zinc finger, C2H2-like
PfamPF139125.0E-13269292IPR007087Zinc finger, C2H2
PROSITE patternPS000280271291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MERHKCKLCI RTFPNGRALG GHMKAHLAAT RQQLGGLDRT ESFSSSYSSS SGEEEVKEEQ  60
EIVKNREMAE EKSLAYGLRE NPKKSFRLAD PEFSFAADTA GSVVVQDRES ETESRNPTRR  120
RSKRIRKSCG FGDNQKQDFD ANKAADLKNP SWVESSSPAE PEPVSSVSDT SPEEDVARCL  180
MMLSRDVWMR NIEDDYEEQV GKDGEKSVEM LQEAEEIKVS KIRGKFRCEK CMKLFRSSKA  240
LSGHKRICSL NATEVRKFAG SADANDRIFE CPYCSKVFGS GQALGGHKRS HLIGSATSTS  300
GVAEASAKLE TSLIDLNLPA PVEDDEFSVV SDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0104s0440.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452722.10.0zinc finger protein ZAT9
TrEMBLA0A2I4KL000.0A0A2I4KL00_POPTR; C2H2 family protein
STRINGPOPTR_0001s15790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-44C2H2-like zinc finger protein