PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0103s0310.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

TCP

Protein Properties

Length: 276aa MW: 27955.1 Da PI: 10.3877

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0103s0310.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.3	2.6e-38	43	130	3	90
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgk 89 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ + s+ +++ns+s + SapurV1A.0103s0310.1.p 43 AKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRAGGNSNSIS 129 79******************************************************************8883333333333322222 PP TCP 90 a 90 + SapurV1A.0103s0310.1.p 130 S 130 2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-33	48	137	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	48	102	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MSDNSGAVNN GSLIDPQRNQ PPGGAGGGGG GGGGGGTNGA LVAKKPPSKD RHSKVDGRGR 60 RIRMPIICAA RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTVSVSVR 120 AGGNSNSISS LSSNNIHSAG SLEHKPLLGP APFILGKRMR PEEDGNGGGK NDDGVSVGPT 180 IGSLMGPTAT AGPGGFWALP ARTDFWGFAA AATPEMDVQP TAVQQSSLIM HHQHAAAMGE 240 ASAARVGNYL PGHLNLLASL SGGTASSGRR EDDRR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0103s0310.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC239435	5e-32	AC239435.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-305j13 map 1, complete sequence.
GenBank	GQ496333	5e-32	GQ496333.1 Solanum lycopersicum TCP transcription factor 15 (TCP15) mRNA, complete cds.
GenBank	HG975440	5e-32	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	5e-32	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002260.1	1e-142	PREDICTED: transcription factor TCP21-like
Swissprot	Q9FMX2	1e-87	TCP7_ARATH; Transcription factor TCP7
TrEMBL	B9H5Q1	1e-127	B9H5Q1_POPTR; TCP family protein
STRING	POPTR_0005s09250.2	1e-128	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-62	TCP family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0103s0310.1.p