PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0101s0250.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 514aa    MW: 55170.6 Da    PI: 7.6305
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0101s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.18.8e-314107199
                  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                             +C++C+vlr++C+++C ++p++      ++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg++++
  SapurV1A.0101s0250.1.p   4 SCNGCRVLRKGCSENCSIRPCLqwiksSESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLMWS 90 
                             6*********************9999777899******************************************************* PP

                  DUF260  83 lqqqleqlkaelallke 99 
                             +++ql+q+++e++l ++
  SapurV1A.0101s0250.1.p  91 GSWQLCQAAVEAVLKGA 107
                             ***********998766 PP
2DUF26040.86.4e-132623224099
                  DUF260  40 snvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                             + v++  + +p ++ + +a  sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e++l ++
  SapurV1A.0101s0250.1.p 262 EPVSRAHHVVPVKKrKVEACGSLLYEACGRIVNPIYGSVGLMWSGSWQLCQAAVEAVLKGA 322
                             556666666776774689*************************************998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.0683109IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-244102IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-8267317IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS SESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLMWS GSWQLCQAAV EAVLKGAPIT PINSEAAVNG  120
HGPPLKVYDI RHVSKEENSA ASNDANRAKT RCRVRRVVKP KASKRASSGN GMASIVVDKL  180
AARDELNRCT SHDSSVSHQS ELAMVDGESK ESGESMVSEE TAEASLLFPP NPESKNDFKA  240
HDVASDEIAG LELGLDLTLG LEPVSRAHHV VPVKKRKVEA CGSLLYEACG RIVNPIYGSV  300
GLMWSGSWQL CQAAVEAVLK GAPITPINSE AAVNGHGPPL KVYDIRHVSK EENSAASNDA  360
SRAKTRCRVR RVVKPKASKR ASSGNGLASI VVDKLAARDE LNRCTSHDSS VSHQSELAMV  420
DGESKESGES MVSEETAEAS LLFPPNPESK NDFKAHDVAS DEIAGLELGL DLTLGLEPVS  480
RAHHVVPVKK RKVEACGSSD ADTCKMELRL EYP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0101s0250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1442340.0EF144234.1 Populus trichocarpa clone PX0011_J05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383458.10.0LOB domain-containing protein 41
SwissprotQ9M8861e-105LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA9P7Z51e-179A9P7Z5_POPTR; Uncharacterized protein
STRINGXP_004489144.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-102LOB domain-containing protein 41