PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0100s0390.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TALE
Protein Properties Length: 338aa    MW: 38409.1 Da    PI: 6.2356
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0100s0390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.5e-072883202254
                             SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              +yp++e++++L +++gL+ +q+ +WF N+R +
  SapurV1A.0100s0390.1.p 288 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 320
                             59*****************************87 PP
2ELK22.52.7e-08241262122
                     ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                             ELKh+L++ Y+ +++++++E++
  SapurV1A.0100s0390.1.p 241 ELKHELKQDYKDKIVDIREEIL 262
                             9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.3E-1676120IPR005540KNOX1
PfamPF037901.7E-1678119IPR005540KNOX1
SMARTSM012562.8E-26129184IPR005541KNOX2
PfamPF037911.0E-18133183IPR005541KNOX2
SMARTSM011880.0042241262IPR005539ELK domain
PROSITE profilePS512139.865241261IPR005539ELK domain
PROSITE profilePS5007111.677261324IPR001356Homeobox domain
SuperFamilySSF466895.56E-16263325IPR009057Homeodomain-like
SMARTSM003896.0E-11263328IPR001356Homeobox domain
CDDcd000867.77E-11264323No hitNo description
Gene3DG3DSA:1.10.10.605.4E-25268324IPR009057Homeodomain-like
PfamPF059201.4E-17281320IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAFRDHQHIP QEMAFQLPHH HLSASPSTGP TWLSNAVLRR HDDVLTQTRV EKPENNTNNG  60
SEEELIDSVS DDWERAKCKA EILGHPIYEQ LLAAHVACLR IATPVDQLAR IDTQLAQSQD  120
VVAKYSGVGR SHVVEEKELD QFMTHYVLLL CSFKDQLQQH VRVHAMEAVM ACWELEQSLQ  180
SLTGVSPGEG TGSTMSDDDD DQAESDANLY DGNLDGLDTM GFGPLVPSEA ERSLMERVRK  240
ELKHELKQDY KDKIVDIREE ILRKRRAGKL PGDTTSLLKA WWQTHSKWPY PTEEDKARLV  300
QETGLQLKQI NNWFINQRKR NWHSSPSGST SKSKRKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317336RKRNWHSSPSGSTSKSKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0100s0390.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7699990.0KP769999.1 Populus tomentosa Homeobox protein knotted-1-like 3 (Potri.006G190000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309315.20.0homeobox protein knotted-1-like LET12
SwissprotP480001e-162KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLB9HAN90.0B9HAN9_POPTR; Uncharacterized protein
STRINGPOPTR_0018s12200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-155KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]