PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0100s0230.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 644aa    MW: 70902.2 Da    PI: 5.6483
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0100s0230.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.71.1e-27209262155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kpr++W+ +LH++Fv+av+q+ G +kA+Pk+il+lm+v+gLt+e+v+SHLQk+Rl
  SapurV1A.0100s0230.2.p 209 KPRVVWSVDLHQKFVSAVNQM-GLDKAVPKKILDLMNVDGLTRENVASHLQKFRL 262
                             79*******************.********************************8 PP
2Response_reg83.27.8e-28241321109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             +l vdD+p+ +++l+++l+k +y ev+++ ++  ale+l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i++++hg++e 
  SapurV1A.0100s0230.2.p  24 ILAVDDDPICLKVLESLLRKCQY-EVTTTNQAITALEMLRENRnkYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSSHGDKEF 108
                             799********************.***************999889*******************87754.558************** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + + +  Ga d+l Kp+ +eel +
  SapurV1A.0100s0230.2.p 109 VYKGVTHGAVDYLLKPVRMEELKN 132
                             *********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.6E-1631643IPR017053Response regulator B-type, plant
SuperFamilySSF521723.7E-3721146IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.8E-4321157No hitNo description
SMARTSM004486.4E-3522134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.19823138IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.1E-2524132IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.56E-3025138No hitNo description
PROSITE profilePS5129411.787206265IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-29206267IPR009057Homeodomain-like
SuperFamilySSF466891.36E-18207266IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-24209262IPR006447Myb domain, plants
PfamPF002491.4E-6211260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MMTVYYQRGG NLVSEKKFPV GMRILAVDDD PICLKVLESL LRKCQYEVTT TNQAITALEM  60
LRENRNKYDL VISDVNMPDM DGFKLLELVG LEMDLPVIML SSHGDKEFVY KGVTHGAVDY  120
LLKPVRMEEL KNIWQHVIRR KKWYPKDQNR SPNQDKVDDG AGEGEHGVTS TGSADQNGKL  180
NRKRKDQDEE DEEEGEDGDD NEVSGNQKKP RVVWSVDLHQ KFVSAVNQMG LDKAVPKKIL  240
DLMNVDGLTR ENVASHLQKF RLYLKRISCG GNQQGNMVSA YGANDASYLR MNSADGFGDF  300
RSMHGPGFQL STTSLSSYPP GTLLGRLNSP GGLTLRGIAS SGLLQPGLLP TNQGFTLASC  360
FPDVKVTIGS SSNTISSVTS SLPILQANPQ QNHSKGSLVT QSSLRMPSLN QESFDVGVHG  420
SSNFLDHSRC DDSWQSAVQL SAFPSFRHDP LPSSTLRDNL SSTTSHIVNS PIDFSSTVSL  480
RAPLEDSRVD MQGQTDFIGN IFQNTTNYIS KNRWEENSQN YNPGLNGSFG AMNSLVSGNA  540
SSGALYQSMD QRKRFGASMI GQSNSGTLSM FQHPDVENFA LDPKMRSNED VTLEQTKSQN  600
GFVQNNYESL DDIMNAMMKQ GQNDASLMGG EFRFGSFSPG SCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-25207268364ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0100s0230.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG5181560.0HG518156.1 Populus x canadensis RR18 gene for response regulator, cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308388.30.0two-component response regulator ARR12 isoform X2
TrEMBLA0A2K2A4F10.0A0A2K2A4F1_POPTR; Two-component response regulator
STRINGPOPTR_0006s20220.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-122response regulator 12