PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0100s0230.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ARR-B | ||||||||
Protein Properties | Length: 677aa MW: 74698.6 Da PI: 6.1356 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.6 | 1.2e-27 | 209 | 262 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ +LH++Fv+av+q+ G +kA+Pk+il+lm+v+gLt+e+v+SHLQk+Rl SapurV1A.0100s0230.1.p 209 KPRVVWSVDLHQKFVSAVNQM-GLDKAVPKKILDLMNVDGLTRENVASHLQKFRL 262 79*******************.********************************8 PP | |||||||
2 | Response_reg | 83.1 | 8.4e-28 | 24 | 132 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 +l vdD+p+ +++l+++l+k +y ev+++ ++ ale+l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i++++hg++e SapurV1A.0100s0230.1.p 24 ILAVDDDPICLKVLESLLRKCQY-EVTTTNQAITALEMLRENRnkYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSSHGDKEF 108 799********************.***************999889*******************87754.558************** PP HHHHHHTTESEEEESS--HHHHHH CS Response_reg 86 alealkaGakdflsKpfdpeelvk 109 + + + Ga d+l Kp+ +eel + SapurV1A.0100s0230.1.p 109 VYKGVTHGAVDYLLKPVRMEELKN 132 *********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 9.0E-163 | 1 | 676 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 8.5E-43 | 21 | 157 | No hit | No description |
SuperFamily | SSF52172 | 3.98E-37 | 21 | 146 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 6.4E-35 | 22 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 44.198 | 23 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.4E-25 | 24 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.02E-29 | 25 | 138 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-29 | 206 | 267 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.787 | 206 | 265 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.45E-18 | 207 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.3E-24 | 209 | 262 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-6 | 211 | 260 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 677 aa Download sequence Send to blast |
MMTVYYQRGG NLVSEKKFPV GMRILAVDDD PICLKVLESL LRKCQYEVTT TNQAITALEM 60 LRENRNKYDL VISDVNMPDM DGFKLLELVG LEMDLPVIML SSHGDKEFVY KGVTHGAVDY 120 LLKPVRMEEL KNIWQHVIRR KKWYPKDQNR SPNQDKVDDG AGEGEHGVTS TGSADQNGKL 180 NRKRKDQDEE DEEEGEDGDD NEVSGNQKKP RVVWSVDLHQ KFVSAVNQMG LDKAVPKKIL 240 DLMNVDGLTR ENVASHLQKF RLYLKRISCG GNQQGNMVSA YGANDASYLR MNSADGFGDF 300 RSMHGPGFQL STTSLSSYPP GTLLGRLNSP GGLTLRGIAS SGLLQPGLLP TNQGKNLFQG 360 ISLEPKQLQM KSINHFGEFN HKRDTAGFTL ASCFPDVKVT IGSSSNTISS VTSSLPILQA 420 NPQQNHSKGS LVTQSSLRMP SLNQESFDVG VHGSSNFLDH SRCDDSWQSA VQLSAFPSFR 480 HDPLPSSTLR DNLSSTTSHI VNSPIDFSST VSLRAPLEDS RVDMQGQTDF IGNIFQNTTN 540 YISKNRWEEN SQNYNPGLNG SFGAMNSLVS GNASSGALYQ SMDQRKRFGA SMIGQSNSGT 600 LSMFQHPDVE NFALDPKMRS NEDVTLEQTK SQNGFVQNNY ESLDDIMNAM MKQGQNDASL 660 MGGEFRFGSF SPGSCM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-25 | 207 | 268 | 3 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0100s0230.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG518156 | 0.0 | HG518156.1 Populus x canadensis RR18 gene for response regulator, cultivar Dorskamp. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308388.3 | 0.0 | two-component response regulator ARR12 isoform X2 | ||||
Swissprot | Q6K8X6 | 1e-125 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | A0A2K2A4F1 | 0.0 | A0A2K2A4F1_POPTR; Two-component response regulator | ||||
STRING | POPTR_0006s20220.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-123 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0100s0230.1.p |
Publications ? help Back to Top | |||
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