PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0099s0270.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 240aa MW: 27812.8 Da PI: 9.9918 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.4 | 1.2e-32 | 104 | 162 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsY+rCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ SapurV1A.0099s0270.1.p 104 LDDGYRWRKYGQKAVKNSKYPRSYFRCTHHSCNVKKQVQRLSRDTSMVVTTYEGVHNHP 162 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-33 | 90 | 162 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-28 | 96 | 163 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.977 | 99 | 164 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.0E-39 | 104 | 163 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-26 | 105 | 162 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEAPPPQLAP SQNPYSYLLL PPPSSLHPSM TEPDHVLSDI DWVGLLSGQS QLGEERPAVE 60 RASMVAENGA EEEKGDRDEK KGGRMKKATR PRFAFQTRSE DDILDDGYRW RKYGQKAVKN 120 SKYPRSYFRC THHSCNVKKQ VQRLSRDTSM VVTTYEGVHN HPCDKLMETL TPLLKQMQFL 180 ARFYAHSQEQ TKQALLFSAI FYFLRQYIRN FNFDYQKTSI RQKLYKKKKK VFQVLVVAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-25 | 94 | 161 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-25 | 94 | 161 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00317 | DAP | Transfer from AT2G46130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0099s0270.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377439 | 1e-171 | GQ377439.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301377.2 | 1e-100 | probable WRKY transcription factor 43 | ||||
TrEMBL | C9DI08 | 3e-99 | C9DI08_9ROSI; WRKY transcription factor 19 | ||||
STRING | EOX95854 | 1e-85 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3227 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46130.1 | 5e-54 | WRKY DNA-binding protein 43 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0099s0270.1.p |