PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0098s0400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 326aa MW: 36646.1 Da PI: 5.4994 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.2 | 5.3e-31 | 156 | 214 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYYrC+s gC ++k+vers++dp++++itY+ eH h SapurV1A.0098s0400.1.p 156 SDMWAWRKYGQKPIKGSPYPRSYYRCSSLkGCLARKQVERSSTDPSIFIITYTAEHSHA 214 79*************************998****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.8E-32 | 140 | 216 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-26 | 149 | 216 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.961 | 150 | 216 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.9E-35 | 155 | 215 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-25 | 157 | 213 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MSSESVCMEE SWDLQAVVRS GCSSNYQEFA EIMNSSPSLF APLRFDQDEL LNFQKTYETP 60 TDFDELDGLY RPFYPALHQT LNSSQDKLLS TCTSTTSMSV REEVKEGRKV QKKKPLSESA 120 TCPNNTIDAT GAAKSKGRKK QHKRVVQHVK EDGLFSDMWA WRKYGQKPIK GSPYPRSYYR 180 CSSLKGCLAR KQVERSSTDP SIFIITYTAE HSHAHPTRRS SLAGSTRIKP STAPKETTPN 240 IEPSMPTIKE QRSPDFEGLL PTATPSMNSI KDEFVQNVSI KNEELSDQGQ ILEENESKEI 300 VMPDLVFGDD LFSTLEDLEG FLLDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-19 | 146 | 216 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 9e-19 | 146 | 216 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0098s0400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006368768.1 | 0.0 | probable WRKY transcription factor 29 | ||||
TrEMBL | A0A3N7FWR6 | 0.0 | A0A3N7FWR6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s09900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6217 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 1e-35 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0098s0400.1.p |