PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0098s0250.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TALE
Protein Properties Length: 659aa    MW: 73381.4 Da    PI: 6.6911
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0098s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.4e-094234601954
                             HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                             Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  SapurV1A.0098s0250.1.p 423 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 460
                             554459******************************88 PP
2BELL115.62.5e-37285355272
                    BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                             + elqk+k+kLls+leeVd+rY++y++q+++v+ssFeavag g+a +Y s+A+ka+SrhFrcL+d i+ qi
  SapurV1A.0098s0250.1.p 285 FIELQKRKTKLLSMLEEVDRRYRHYRDQMKAVVSSFEAVAGTGAASVYSSIASKAMSRHFRCLRDGIVAQI 355
                             689******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-57223353IPR006563POX domain
PfamPF075262.4E-44229351IPR006563POX domain
PROSITE profilePS5007112.179401464IPR001356Homeobox domain
SMARTSM003895.8E-9404468IPR001356Homeobox domain
CDDcd000862.38E-11404465No hitNo description
SuperFamilySSF466895.99E-17405470IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27407470IPR009057Homeodomain-like
PfamPF059208.8E-18421460IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MARELCENKS TSMVSSGSFC YTDGSSSNPA IQTHLVNQIH GFESNPEMFN LTTGMEMIGF  60
SKNLQQQKSD SNSSMWKGFF NKPPNTINPG GPSSSKTIND STSGVFYQHE FSKPDFSTGI  120
SDSSNENLMA GPDHSAPWQE NRLLVDDSSL RCVFPCEGNE RPSQGLSLSL CSSNPSSIGL  180
QPFELRHTPT NQNQDNQQEE MRSFGKSPAN IQQQMMQAAN LHHQGQFQLR SSKFMGPAQD  240
LLNEFCSLGT KQGDELKQKF HKPKQWDDDQ NGSSSRKPPL QSLEFIELQK RKTKLLSMLE  300
EVDRRYRHYR DQMKAVVSSF EAVAGTGAAS VYSSIASKAM SRHFRCLRDG IVAQIHAAQK  360
ATGEKDPVAP GTTRGETPRL KVLDQALRQQ RAFQQMSMME SHPWRPQRGL PERSVSVLRA  420
WLFEHFLHPY PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEMY LEETKEQDNS  480
MASSDGVTGL DENINGRPNQ NPSSTDQKPT PDQLIRIDSE CLSSIISNPD KNDTNNSTKT  540
FQSHHVQHQQ QNFGNFGAME LDFSSYNHHT AAGVSYANDS VNNQNFNGGG VSLTLGLQQH  600
GGSGVGLAFS PASQSSLFYP RDHIEDCQQV QYSLLDGEGQ NLPYRNLMGA QLLHDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15410468563Homeobox protein Meis2
3k2a_B3e-15410468563Homeobox protein Meis2
4xrm_A3e-15410468563Homeobox protein Meis2
4xrm_B3e-15410468563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0098s0250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029331.10.0PREDICTED: homeobox protein BEL1 homolog
SwissprotQ388971e-152BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A2K2BV970.0A0A2K2BV97_POPTR; Uncharacterized protein
STRINGPOPTR_0001s09720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46502030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-149TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]