PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0095s0590.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 182aa MW: 20231.2 Da PI: 8.9269 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0016 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H SapurV1A.0095s0590.1.p 48 FECKTCNRQFPSFQALGGHRASH 70 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.9E-9 | 46 | 115 | No hit | No description |
Pfam | PF13912 | 3.0E-13 | 47 | 72 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 48 | 70 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.0E-9 | 92 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.912 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MKRGFHEREI DNITMANCLM ILSRGRESYS FPPFDPALMS QNSPSRVFEC KTCNRQFPSF 60 QALGGHRASH KKPRLMGGDG SFETQSPAKP KTHECSICGL EFAIGQALGG HMRRHRVASL 120 NDQNQVDPLS PPSIDRQQVV PLVKRSNSRN VLCLDLNLTP YENDMELFKL GKAAPAVNCF 180 L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0095s0590.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN700523 | 1e-161 | JN700523.1 Populus trichocarpa C2H2-type zinc finger protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024465761.1 | 1e-112 | zinc finger protein ZAT11 | ||||
TrEMBL | G8IEK9 | 1e-110 | G8IEK9_POPTR; C2H2 family protein | ||||
STRING | POPTR_0010s21650.1 | 1e-103 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 3e-39 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0095s0590.1.p |