PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0094s0370.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRF | ||||||||
Protein Properties | Length: 512aa MW: 56310.5 Da PI: 7.7342 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.8 | 9.4e-24 | 186 | 229 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rC+RtDGKkWRCsr+v +++k+CErH h++r rsrk++e SapurV1A.0094s0370.2.p 186 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVE 229 79***************************************987 PP | |||||||
2 | QLQ | 55.8 | 1.4e-19 | 121 | 156 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FTaaQ+q+L++Q ++y y++a++PvPpeLl++i+k SapurV1A.0094s0370.2.p 121 LFTAAQWQELERQTTIYNYMMASVPVPPELLMPITK 156 5*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 8.8E-12 | 120 | 156 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.572 | 121 | 156 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.0E-14 | 122 | 154 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.402 | 186 | 230 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.6E-19 | 187 | 229 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MRSSWRRTSS GVFVDDAGLG LRMQDNQESC SKRSVMAMSC NLEPAAHELS SSSFRPKFYG 60 TGNHVTCFGD INDVVSASGT GSTDAITVSK SLQYPYFTSD SSLFTFNSSG EMTPSVNERV 120 LFTAAQWQEL ERQTTIYNYM MASVPVPPEL LMPITKNQSN VLPPKSNSNI INSSLELGIP 180 SLNSSDPEPW RCKRTDGKKW RCSRDVAPDQ KYCERHSHKS RPRSRKPVEL HSHDSLRTLT 240 NNNTNTNNNN CSTNPHLFNQ KPYFPNHLFM FSSAMASSAN SYDQPRSLEW LLKGENLPVA 300 SNHSPEWQHL KRDGIKGNGK LYNLYREEQP LCSNTYRGGH SLQAQRLNDH CSMFSSPKSN 360 SLERALNPSM TEAQETRHFI DAWSTDSGRD DIGGIGQKSY VSSSEKLVLP HSALALSPGT 420 RTETNDEGNG GPQLSSFGIM GSWDSHHQST VSGLRPQWMT SHGGSWMVSP PGGPLAEALC 480 LGISSNAKTA SNLPSPCSSS CGPNVDQNQL I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0094s0370.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464387.1 | 0.0 | growth-regulating factor 8 isoform X1 | ||||
TrEMBL | A0A3N7FAP6 | 0.0 | A0A3N7FAP6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s11480.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24150.1 | 9e-41 | growth-regulating factor 8 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0094s0370.2.p |