PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0094s0370.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRF
Protein Properties Length: 515aa    MW: 56625.9 Da    PI: 7.7342
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0094s0370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.89.5e-24189232144
                     WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                             d+ep+rC+RtDGKkWRCsr+v +++k+CErH h++r rsrk++e
  SapurV1A.0094s0370.1.p 189 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVE 232
                             79***************************************987 PP
2QLQ55.81.4e-19121156237
                     QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                              FTaaQ+q+L++Q ++y y++a++PvPpeLl++i+k
  SapurV1A.0094s0370.1.p 121 LFTAAQWQELERQTTIYNYMMASVPVPPELLMPITK 156
                             5*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.8E-12120156IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.572121156IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.0E-14122154IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.402189233IPR014977WRC domain
PfamPF088791.6E-19190232IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MRSSWRRTSS GVFVDDAGLG LRMQDNQESC SKRSVMAMSC NLEPAAHELS SSSFRPKFYG  60
TGNHVTCFGD INDVVSASGT GSTDAITVSK SLQYPYFTSD SSLFTFNSSG EMTPSVNERV  120
LFTAAQWQEL ERQTTIYNYM MASVPVPPEL LMPITKNQSN VLPPKSNSNI INMLTGSLEL  180
GIPSLNSSDP EPWRCKRTDG KKWRCSRDVA PDQKYCERHS HKSRPRSRKP VELHSHDSLR  240
TLTNNNTNTN NNNCSTNPHL FNQKPYFPNH LFMFSSAMAS SANSYDQPRS LEWLLKGENL  300
PVASNHSPEW QHLKRDGIKG NGKLYNLYRE EQPLCSNTYR GGHSLQAQRL NDHCSMFSSP  360
KSNSLERALN PSMTEAQETR HFIDAWSTDS GRDDIGGIGQ KSYVSSSEKL VLPHSALALS  420
PGTRTETNDE GNGGPQLSSF GIMGSWDSHH QSTVSGLRPQ WMTSHGGSWM VSPPGGPLAE  480
ALCLGISSNA KTASNLPSPC SSSCGPNVDQ NQLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0094s0370.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464387.10.0growth-regulating factor 8 isoform X1
TrEMBLA0A3N7FAP60.0A0A3N7FAP6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138941621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.15e-43growth-regulating factor 8