PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0093s0220.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 290aa MW: 32146.4 Da PI: 7.6911 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33 | 1.3e-10 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+vkgLtl+h+kSHLQk+Rl SapurV1A.0093s0220.4.p 1 MRVMGVKGLTLYHLKSHLQKFRL 23 789*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-9 | 1 | 24 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 5.6E-21 | 62 | 101 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MRVMGVKGLT LYHLKSHLQK FRLGKQPHKD FNDHSIKDGS ALDLQRSSAS SSGMMSRSMN 60 EMQMEVQRRL HEQLEVQRHL QLRTEAQGKY IQSLLEKACQ TLAGDQNLAS VSYKGMGNQG 120 ISDMGGMKEF GTLNFPAFQD LNIYGGDQLD LQHNMDRPSL DGFMPNSDNI CLGKKRPSPY 180 GGSGKSPLIW SDDLRLQDLG SGPACLEPHD DPFKGDQIQM APPSMDRGTD LDSMSDMYEI 240 KPSHQGDALD EKKFEASAKL KRPSPRRAER MSPMINTGGM PQGRNSPFG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0093s0220.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY675562 | 0.0 | AY675562.1 Populus tomentosa myb family transcription factor-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002315080.2 | 0.0 | myb family transcription factor APL isoform X2 | ||||
Swissprot | Q9SAK5 | 1e-82 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | B9HYB7 | 0.0 | B9HYB7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s18130.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.1 | 2e-77 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0093s0220.4.p |
Publications ? help Back to Top | |||
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