PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0093s0220.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 290aa MW: 32146.4 Da PI: 7.6911

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0093s0220.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	33	1.3e-10	1	23	33	55
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+vkgLtl+h+kSHLQk+Rl SapurV1A.0093s0220.3.p 1 MRVMGVKGLTLYHLKSHLQKFRL 23 789*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-9	1	24	IPR009057	Homeodomain-like
Pfam	PF14379	5.6E-21	62	101	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MRVMGVKGLT LYHLKSHLQK FRLGKQPHKD FNDHSIKDGS ALDLQRSSAS SSGMMSRSMN 60 EMQMEVQRRL HEQLEVQRHL QLRTEAQGKY IQSLLEKACQ TLAGDQNLAS VSYKGMGNQG 120 ISDMGGMKEF GTLNFPAFQD LNIYGGDQLD LQHNMDRPSL DGFMPNSDNI CLGKKRPSPY 180 GGSGKSPLIW SDDLRLQDLG SGPACLEPHD DPFKGDQIQM APPSMDRGTD LDSMSDMYEI 240 KPSHQGDALD EKKFEASAKL KRPSPRRAER MSPMINTGGM PQGRNSPFG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0093s0220.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY675562	0.0	AY675562.1 Populus tomentosa myb family transcription factor-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002315080.2	0.0	myb family transcription factor APL isoform X2
Swissprot	Q9SAK5	1e-82	APL_ARATH; Myb family transcription factor APL
TrEMBL	B9HYB7	0.0	B9HYB7_POPTR; Uncharacterized protein
STRING	POPTR_0010s18130.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.1	2e-77	G2-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0093s0220.3.p

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]