PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0091s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family BBR-BPC
Protein Properties Length: 314aa    MW: 35152.9 Da    PI: 10.1487
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0091s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind340.73.7e-10433133301
               GAGA_bind   3 ddgsrernkg.yye..................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaer 70 
                             d++   r k  yy+                  ++++l+  +++++m+++ erd++irernla++ekk+a+a+rd+a +qr+kalaer
  SapurV1A.0091s0140.1.p   3 DQNG--RYKMdYYKsahphppwnmmprnqvkeQTNALA--MNKKIMTILIERDDAIRERNLAFAEKKEALAARDEAIQQREKALAER 85 
                             4433..55555777888888888887766642335555..99********************************************* PP

               GAGA_bind  71 nkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrak 157
                             +kal+erdn+++a++++en++  + p + ++ +g+k i +     ++    +a +  e+++++alpi++ + e+ +++++k+++++k
  SapurV1A.0091s0140.1.p  86 DKALMERDNAVAAIQYRENAM--NYPLSGGSQRGSKRIPHPVY--HSSDVSEALDRGEMHITNALPISSVPAETAKSRQTKRSKENK 168
                             *******************85..5678889999*****97766..544455677889**************9999999999988888 PP

               GAGA_bind 158 kpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243
                              +  k ak+++k +++ ++ +k+  +d ++ k e++s+d+ ln +++De+t+ +PvCsCtGa+rqCYkWG+GGWqSaCCttt+S yP
  SapurV1A.0091s0140.1.p 169 AAGLKAAKSPRKGNRAGEDLNKQGASDgKKIKVEWDSQDVHLNLINFDETTMTAPVCSCTGAPRQCYKWGSGGWQSACCTTTLSSYP 255
                             888888887777666665555555555689********************************************************* PP

               GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                             LP+ +++r aR++grKmS+++f++lL++LaaeG+dls p+DLkd+WA+HGtn+++ti+
  SapurV1A.0091s0140.1.p 256 LPQLPNKRRARVGGRKMSGNVFTRLLSRLAAEGHDLSIPLDLKDYWARHGTNRYITIK 313
                             *********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.0E-1721313IPR010409GAGA-binding transcriptional activator
PfamPF062176.6E-9719313IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEDQNGRYKM DYYKSAHPHP PWNMMPRNQV KEQTNALAMN KKIMTILIER DDAIRERNLA  60
FAEKKEALAA RDEAIQQREK ALAERDKALM ERDNAVAAIQ YRENAMNYPL SGGSQRGSKR  120
IPHPVYHSSD VSEALDRGEM HITNALPISS VPAETAKSRQ TKRSKENKAA GLKAAKSPRK  180
GNRAGEDLNK QGASDGKKIK VEWDSQDVHL NLINFDETTM TAPVCSCTGA PRQCYKWGSG  240
GWQSACCTTT LSSYPLPQLP NKRRARVGGR KMSGNVFTRL LSRLAAEGHD LSIPLDLKDY  300
WARHGTNRYI TIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0091s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1305590.0EU130559.1 Populus trichocarpa GAGA-motif binding transcriptional activator (BBR/BPC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305467.10.0protein BASIC PENTACYSTEINE4
RefseqXP_024456017.10.0protein BASIC PENTACYSTEINE4
RefseqXP_024456018.10.0protein BASIC PENTACYSTEINE4
SwissprotQ8S8C61e-133BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA8D1930.0A8D193_POPTR; GAGA-motif binding transcriptional activator
STRINGPOPTR_0004s17060.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-129basic pentacysteine 4