PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0090s0740.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 468aa MW: 53299.1 Da PI: 5.805 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.2 | 7.5e-19 | 112 | 200 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+l++s+v+ ++ lp +f++ h +k +++t+ le+esg+++ +++i ++ + l++GWk F+ an+L egD++vF+l++ SapurV1A.0090s0740.2.p 112 FAKTLVRSNVTVGFWMHLPMRFCKMHL-PK-NDTTIFLENESGEEYILNYIAER----TALSGGWKAFCAANNLHEGDVLVFHLVKP 192 89*********************9994.33.5679***************4444....55************************998 PP SEE..EEEEE CS B3 88 sefelvvkvf 97 s+f +v ++ SapurV1A.0090s0740.2.p 193 SRF--KVYIV 200 888..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.2E-23 | 105 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-24 | 106 | 202 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.19E-26 | 110 | 201 | No hit | No description |
Pfam | PF02362 | 4.5E-17 | 112 | 200 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-20 | 112 | 203 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.099 | 112 | 203 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MDDKEDQNTS PKPPLPISNP APLNTYPRIR RRKPNMSKIK LTQIHEKSPE PEHKTGHELV 60 LYDKSGDSRE PRSRKRKKDA FSVFYDSTET KSPAMELAEE FRANLESAYP SFAKTLVRSN 120 VTVGFWMHLP MRFCKMHLPK NDTTIFLENE SGEEYILNYI AERTALSGGW KAFCAANNLH 180 EGDVLVFHLV KPSRFKVYIV KGNGSSQGDG EFGIPNSEPA EKDVKGSKKA ELLELLPVGH 240 QEENNQENGL IAEENNKGYV ANQSENESEE RASETLRVIK LSGSTVDFNN VKGIENFSIL 300 LNGFSIDSEL SEHHRTRYYE LCRSQKSFLH SNLLNSINHN LAVEIIIGTV DISEGIKSSK 360 LSSSQADYGV WDKTLKGFEL FGMKVGFLRE RLSRLMSLAL ESEEAMESEC REVRLEQVRV 420 DEEMKSLELR LLKLKETRER LDDEMEILKE NAEKHEHMFQ EAVNAPW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 77 | RKRKK |
2 | 73 | 78 | RKRKKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0090s0740.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU229503 | 5e-86 | CU229503.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024463707.1 | 0.0 | B3 domain-containing protein Os01g0234100 isoform X2 | ||||
TrEMBL | A0A2K1Z5T1 | 0.0 | A0A2K1Z5T1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s10620.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-34 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0090s0740.2.p |