PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0090s0740.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 477aa    MW: 54169.1 Da    PI: 5.8075
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0090s0740.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.7e-19112200197
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             f k+l++s+v+   ++ lp +f++ h  +k +++t+ le+esg+++ +++i ++    + l++GWk F+ an+L egD++vF+l++ 
  SapurV1A.0090s0740.1.p 112 FAKTLVRSNVTVGFWMHLPMRFCKMHL-PK-NDTTIFLENESGEEYILNYIAER----TALSGGWKAFCAANNLHEGDVLVFHLVKP 192
                             89*********************9994.33.5679***************4444....55************************998 PP

                             SEE..EEEEE CS
                      B3  88 sefelvvkvf 97 
                             s+f  +v ++
  SapurV1A.0090s0740.1.p 193 SRF--KVYIV 200
                             888..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-23105203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-24106202IPR015300DNA-binding pseudobarrel domain
CDDcd100172.77E-26110201No hitNo description
PfamPF023624.6E-17112200IPR003340B3 DNA binding domain
SMARTSM010191.9E-20112203IPR003340B3 DNA binding domain
PROSITE profilePS5086314.099112203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDDKEDQNTS PKPPLPISNP APLNTYPRIR RRKPNMSKIK LTQIHEKSPE PEHKTGHELV  60
LYDKSGDSRE PRSRKRKKDA FSVFYDSTET KSPAMELAEE FRANLESAYP SFAKTLVRSN  120
VTVGFWMHLP MRFCKMHLPK NDTTIFLENE SGEEYILNYI AERTALSGGW KAFCAANNLH  180
EGDVLVFHLV KPSRFKVYIV KGNGSSQGDG EFGIPNSGAN GKEIISEPAE KDVKGSKKAE  240
LLELLPVGHQ EENNQENGLI AEENNKGYVA NQSENESEER ASETLRVIKL SGSTVDFNNV  300
KGIENFSILL NGFSIDSELS EHHRTRYYEL CRSQKSFLHS NLLNSINHNL AVEIIIGTVD  360
ISEGIKSSKL SSSQADYGVW DKTLKGFELF GMKVGFLRER LSRLMSLALE SEEAMESECR  420
EVRLEQVRVD EEMKSLELRL LKLKETRERL DDEMEILKEN AEKHEHMFQE AVNAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17377RKRKK
27378RKRKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0090s0740.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2295035e-86CU229503.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313110.10.0B3 domain-containing protein Os01g0234100 isoform X1
TrEMBLB9HRZ40.0B9HRZ4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-34B3 family protein